Scaffold Ga0334982_0003117

Overview

Basic Information

• Taxon OID: 3300033981
• Scaffold ID: Ga0334982_0003117
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10246
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (15.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000847	Metagenome / Metatranscriptome	861	N
F001981	Metagenome / Metatranscriptome	608	N
F010464	Metagenome / Metatranscriptome	303	N
F038589	Metagenome / Metatranscriptome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334982_0003117_2726_3229	F000847	N/A	MSWIKIKQALLDLANAHPQVNSFGTGDPLAVGTDNTINLRTPSRERIVYPLVFADVQSASTDAGTLDLVVGVYFSDRVESIKPMGGVVSGSPTLGWQDNEDEVLSDQLQVAQDFISALTNDPSEDWTLSSSVSLTRFVESRDDRTAGWQATMTFEIPYGHSVCEIPT
Ga0334982_0003117_5665_5940	F010464	GAG	MNLIETTIVGSVAAIVGGAVAWFTKGRVESDSLQVRQAQAVLAMWQATSESQNKELTQLRNEVVSLRQRLEEMEHTIYTLQAENAKLKTLV
Ga0334982_0003117_8734_8955	F038589	N/A	MNLLEQMNADEFKKLLEFKEKYPTLGENLIKALTEKIVVIHLTVDDCINLCQALGIPWAGLFNQIFDAFKSKP
Ga0334982_0003117_8952_9401	F001981	N/A	MTYPTLITIPKADICKAEIAQIAQQLTDRINDGEVNPVEAHIKLKAIVKALEATIKATEQTVADEAAKHGKTFSAFGAEITLKEGSLTPNYEEDEVYADLKSQIKAREELLKMAFRQAGKTAIFDERTGEQIPVCTAKATKASIAVSFK