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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033981 Open in IMG/M |
| Scaffold ID | Ga0334982_0002664 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 10989 |
| Total Scaffold Genes | 30 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 25 (83.33%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000808 | Metagenome / Metatranscriptome | 882 | Y |
| F011386 | Metagenome / Metatranscriptome | 291 | Y |
| F025743 | Metagenome | 200 | Y |
| F048982 | Metagenome / Metatranscriptome | 147 | Y |
| F079977 | Metagenome | 115 | Y |
| F093237 | Metagenome | 106 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334982_0002664_2160_2402 | F025743 | GGAG | MTDTITRMELVYADLLTPGQLMEGDLINIDMDIVEVISIVDDATGDNYIITHRNEYGEEYEYYCTYEEMFKLYVFIDLDE |
| Ga0334982_0002664_2403_2543 | F079977 | GGAGG | MNNLYSILADWYPEGNYTEADLWEAIAESEGLDVSEIMDRDLTEFI |
| Ga0334982_0002664_3014_3223 | F000808 | AGGA | MEYNYSLTIAYDGELVSTTRTADMLEIVNAWNKCVDYGTAKEYATYNLSDPMGKMYTKTFYRNGKVAVK |
| Ga0334982_0002664_5071_5241 | F048982 | AGGA | MSIELQDVLAITRKIRNNDRDSGTHYLLGYLWANTPDKEKERIAKLFAKDLEMENK |
| Ga0334982_0002664_5345_5524 | F093237 | GAG | MRYKYDLGDTATMSHQEMLDALMAREVAPRTIVGTGYKNGRKVAIDYLKEMIAKESEVK |
| Ga0334982_0002664_7252_7431 | F011386 | AGGA | MKVTLTSMAGNTRNINLSTKQEVYDFIELFKSTLQPSQRMKVTCDLLGIDGYLQGESKI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |