NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334982_0001825

Scaffold Ga0334982_0001825


Overview

Basic Information
Taxon OID3300033981 Open in IMG/M
Scaffold IDGa0334982_0001825 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13319
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (35.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006262Metagenome / Metatranscriptome377Y
F009147Metagenome / Metatranscriptome322N
F010611Metagenome / Metatranscriptome301N
F038227Metagenome / Metatranscriptome166N

Sequences

Protein IDFamilyRBSSequence
Ga0334982_0001825_12477_12737F009147N/AMAVQADISTEYSMGREGFELFTTTAAQTGAWSGLIPIEPTVFTSITGYRIAGTWTSKTIPAGTPLVGNITGFQISSGSVVAFNARA
Ga0334982_0001825_12737_12967F038227N/AMISLGIALNRLFAGQAGGTDAPVLRRDVLQEDDFFVLQEDGSGKLVITFGTADHLDLENNDFVLQEDNFKLQIQSN
Ga0334982_0001825_5623_6252F010611N/AMTQRAYAEHAGITHGYVNYLVKKGMPMDSMEAADTWRQKNVRRRSDFTKDLPPQQDTTAIEQEGPYRPAEASNPIDTATAATDSPEGAYERQRQIERAAYDLAVDALRGGRADAGRLVAIHAAAAKNLTSARDEVIAQAEKERRLVSGDWVRKVMQEHDGAVASLLKAMPKQLSGRIAPHDPEHAERELTRWVQEVCLKTLHNTDPWKS
Ga0334982_0001825_8139_8546F006262AGGMFTFTVAIKRSYLRAVYSTLGGVTLLAALSAKSVAASSVIESGQVVRSTSSSDVSVEFAEPGKGAPTPSEMVEMWENLIGDYELAVYYLGQDGIASPTDTQIYNKMMAVVLVAATSYGGDFSNFRREASYRVGMS
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