NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334982_0001683

Scaffold Ga0334982_0001683


Overview

Basic Information
Taxon OID3300033981 Open in IMG/M
Scaffold IDGa0334982_0001683 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13811
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (44.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005702Metagenome392Y
F005846Metagenome388Y
F007164Metagenome / Metatranscriptome356Y
F010463Metagenome303N
F012113Metagenome / Metatranscriptome283Y
F023585Metagenome209Y

Sequences

Protein IDFamilyRBSSequence
Ga0334982_0001683_10789_11172F010463N/AMVLAATIHRVKMCEDKLREFEQMVTTLTSTMAQNRAELASKGLEKFVIGVTTPLDIPKELIPTYGKAGARRNREYSTVKKRWTLWKHQLDSGMSMSELARAWGVHPTAILFAKKQNFIVRKAKGGSR
Ga0334982_0001683_13170_13643F007164AGGAMSEKQIGMELQKTVKQLEKAKENAIQQMGEAIGLAADAGDILLSARVEGLDLDTIQEVAGINGEQARRYERVAKARPSLQAPTPGGLKQLALWTGLLPDPIETSNPKAEQAWHSYIIKARQWLARKSVTNWTPAQRTQFLEEARPIVEAYKEAGGEL
Ga0334982_0001683_4509_4679F012113N/AMNQILTFIQSQDVFAWVGALVALLSAVIAVASLIPGDEPETTLRKVVDFLSKFSRK
Ga0334982_0001683_7141_7710F005846N/AMTSFPLPARPVGSAVPASHDEFSDGFSIEGKLNGWRGWFDQETQQGYNRHGKFATNHKLMADRILGAGIKSRFVDCEIMGQRTKTGNGTIVVMDAFDPANPKPYAERMKEIEHLEAVTFDVPQNKLLRFVRLAHHKINSIWEEMNYQNNKAGEVIWEGFVMKAMDDGKYPFITNPNYCSPAWQKQRIRW
Ga0334982_0001683_7683_7922F005702N/ALAKTEDSLVIIFLVAFFGLLILQGVRLFAKHIDQQNYERRQFYLYVAAELEKMDKIVAEGNQPKQPELMLPSKNWVGRN
Ga0334982_0001683_9801_10010F023585AGGAMSVKRLKLLEEFHGIVSKRLKDLFKDFDHAKRENYKDIISHLDYSHRITKELLERAKKYQKIDMEKAKK

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