Basic Information | |
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Taxon OID | 3300033981 Open in IMG/M |
Scaffold ID | Ga0334982_0001683 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 13811 |
Total Scaffold Genes | 25 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (44.00%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (33.33%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F005702 | Metagenome | 392 | Y |
F005846 | Metagenome | 388 | Y |
F007164 | Metagenome / Metatranscriptome | 356 | Y |
F010463 | Metagenome | 303 | N |
F012113 | Metagenome / Metatranscriptome | 283 | Y |
F023585 | Metagenome | 209 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0334982_0001683_10789_11172 | F010463 | N/A | MVLAATIHRVKMCEDKLREFEQMVTTLTSTMAQNRAELASKGLEKFVIGVTTPLDIPKELIPTYGKAGARRNREYSTVKKRWTLWKHQLDSGMSMSELARAWGVHPTAILFAKKQNFIVRKAKGGSR |
Ga0334982_0001683_13170_13643 | F007164 | AGGA | MSEKQIGMELQKTVKQLEKAKENAIQQMGEAIGLAADAGDILLSARVEGLDLDTIQEVAGINGEQARRYERVAKARPSLQAPTPGGLKQLALWTGLLPDPIETSNPKAEQAWHSYIIKARQWLARKSVTNWTPAQRTQFLEEARPIVEAYKEAGGEL |
Ga0334982_0001683_4509_4679 | F012113 | N/A | MNQILTFIQSQDVFAWVGALVALLSAVIAVASLIPGDEPETTLRKVVDFLSKFSRK |
Ga0334982_0001683_7141_7710 | F005846 | N/A | MTSFPLPARPVGSAVPASHDEFSDGFSIEGKLNGWRGWFDQETQQGYNRHGKFATNHKLMADRILGAGIKSRFVDCEIMGQRTKTGNGTIVVMDAFDPANPKPYAERMKEIEHLEAVTFDVPQNKLLRFVRLAHHKINSIWEEMNYQNNKAGEVIWEGFVMKAMDDGKYPFITNPNYCSPAWQKQRIRW |
Ga0334982_0001683_7683_7922 | F005702 | N/A | LAKTEDSLVIIFLVAFFGLLILQGVRLFAKHIDQQNYERRQFYLYVAAELEKMDKIVAEGNQPKQPELMLPSKNWVGRN |
Ga0334982_0001683_9801_10010 | F023585 | AGGA | MSVKRLKLLEEFHGIVSKRLKDLFKDFDHAKRENYKDIISHLDYSHRITKELLERAKKYQKIDMEKAKK |
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