Basic Information | |
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Taxon OID | 3300033981 Open in IMG/M |
Scaffold ID | Ga0334982_0001556 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 14380 |
Total Scaffold Genes | 22 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (63.64%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000722 | Metagenome / Metatranscriptome | 922 | Y |
F011919 | Metagenome | 285 | N |
F013988 | Metagenome | 266 | Y |
F023058 | Metagenome | 211 | N |
F033421 | Metagenome | 177 | N |
F077300 | Metagenome | 117 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0334982_0001556_11805_12107 | F000722 | N/A | LVALESSEVTEEQYPETGITEETRRMYPETYSDKYNKVFMQFVDDIFRPNHVPAPKHTHDILLDELAIMYDASMEAGGEQARFNASVLRAAINVIMTCTK |
Ga0334982_0001556_12196_12567 | F011919 | N/A | MQESEADQMNDLQLFAPSRGLGQYREECAIDRNTVIISPSAKPTSVIAALNALPKSGSKRRRVYEYLKQTGGATDEEIERALGISGNTVRPTRGSLVKDKFVYATDLERPTLAGNMAIVWKAR |
Ga0334982_0001556_13091_13237 | F077300 | AGGA | MRNPSEEYDRLHDHCQALGRERDWLKKEVERLTDELYLAHEALRRAFP |
Ga0334982_0001556_4243_4869 | F013988 | GGAG | MAVYTVTEKYLLDNYAVVQLLTPAEIELGASVVIAGVDATFNGTYTVRALPQYLYTGIDTYGDLLYDVNVPIANQVLFAKTAADVQRVAATGTLTITQTCTWVTAANIEDWLGIGTATAADAAFLTVCAAAASQFCWRRRMEAGYVDSLTTVPSQDVFLGTQMYGGALYRQRGSVDQFASFQNMGVTPVMGLNGMIRQLLGIDRPQVA |
Ga0334982_0001556_6148_6663 | F033421 | GAG | MAEGIETRIEVYGLKEALKELNKIDKSLRREITKDYKRITAGLVSDIESAIPLNYPLSGWQRSWSLRGSYQVFPWPTEHKVKAYINTKPPKEFRQNTVNLTTFAIKWIGAAASFFDFSTSNRMGAALTAKYGDSSRVVWRQYEAHKEDLNDAMETLVDRVGKAVGQNLKAQ |
Ga0334982_0001556_8064_9356 | F023058 | N/A | MAGVAVLGSGNYDLEIDTGYDWNAFTLDDDLKGELDNTEYVLDGTSQFASVLDGAISLTAKRGRANTGDQFAYGTMNFTLNDTYADGVFNPFDTTSPYFDPNNNQPGLAPLREVRFSRYSSTNVKELLWVGYIVNYDYTFTLGGLDTVTVNCADFSYQLGQTFLAEWNVTEQLSSERFDDLLDLPEVAYTGTRSIETGVATLGGAAAYTVANGTSVAGYANKINEAEQGRIFVDREGTITFQKRIGTTLGVPVAEFHDDGTQIGYSAIDISFQADTVVNRASIQHAGATSPEVAEDLASQALYLVQTQSITDSLLHNDAAALTLAQYLISPDPEARFNFLGTEFPGTPALDQDTLALLDVGDLINIQKSITTSSGPTQFAQNLTIEGLEHRLTLSAGHAVTYFTSPTTIVYELILDDLVYGTLDEENVLG |
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