Scaffold Ga0334982_0001556

Overview

Basic Information

• Taxon OID: 3300033981
• Scaffold ID: Ga0334982_0001556
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14380
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (63.64%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000722	Metagenome / Metatranscriptome	922	Y
F011919	Metagenome	285	N
F013988	Metagenome	266	Y
F023058	Metagenome	211	N
F033421	Metagenome	177	N
F077300	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334982_0001556_11805_12107	F000722	N/A	LVALESSEVTEEQYPETGITEETRRMYPETYSDKYNKVFMQFVDDIFRPNHVPAPKHTHDILLDELAIMYDASMEAGGEQARFNASVLRAAINVIMTCTK
Ga0334982_0001556_12196_12567	F011919	N/A	MQESEADQMNDLQLFAPSRGLGQYREECAIDRNTVIISPSAKPTSVIAALNALPKSGSKRRRVYEYLKQTGGATDEEIERALGISGNTVRPTRGSLVKDKFVYATDLERPTLAGNMAIVWKAR
Ga0334982_0001556_13091_13237	F077300	AGGA	MRNPSEEYDRLHDHCQALGRERDWLKKEVERLTDELYLAHEALRRAFP
Ga0334982_0001556_4243_4869	F013988	GGAG	MAVYTVTEKYLLDNYAVVQLLTPAEIELGASVVIAGVDATFNGTYTVRALPQYLYTGIDTYGDLLYDVNVPIANQVLFAKTAADVQRVAATGTLTITQTCTWVTAANIEDWLGIGTATAADAAFLTVCAAAASQFCWRRRMEAGYVDSLTTVPSQDVFLGTQMYGGALYRQRGSVDQFASFQNMGVTPVMGLNGMIRQLLGIDRPQVA
Ga0334982_0001556_6148_6663	F033421	GAG	MAEGIETRIEVYGLKEALKELNKIDKSLRREITKDYKRITAGLVSDIESAIPLNYPLSGWQRSWSLRGSYQVFPWPTEHKVKAYINTKPPKEFRQNTVNLTTFAIKWIGAAASFFDFSTSNRMGAALTAKYGDSSRVVWRQYEAHKEDLNDAMETLVDRVGKAVGQNLKAQ
Ga0334982_0001556_8064_9356	F023058	N/A	MAGVAVLGSGNYDLEIDTGYDWNAFTLDDDLKGELDNTEYVLDGTSQFASVLDGAISLTAKRGRANTGDQFAYGTMNFTLNDTYADGVFNPFDTTSPYFDPNNNQPGLAPLREVRFSRYSSTNVKELLWVGYIVNYDYTFTLGGLDTVTVNCADFSYQLGQTFLAEWNVTEQLSSERFDDLLDLPEVAYTGTRSIETGVATLGGAAAYTVANGTSVAGYANKINEAEQGRIFVDREGTITFQKRIGTTLGVPVAEFHDDGTQIGYSAIDISFQADTVVNRASIQHAGATSPEVAEDLASQALYLVQTQSITDSLLHNDAAALTLAQYLISPDPEARFNFLGTEFPGTPALDQDTLALLDVGDLINIQKSITTSSGPTQFAQNLTIEGLEHRLTLSAGHAVTYFTSPTTIVYELILDDLVYGTLDEENVLG