NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334982_0001556

Scaffold Ga0334982_0001556


Overview

Basic Information
Taxon OID3300033981 Open in IMG/M
Scaffold IDGa0334982_0001556 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14380
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (63.64%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000722Metagenome / Metatranscriptome922Y
F011919Metagenome285N
F013988Metagenome266Y
F023058Metagenome211N
F033421Metagenome177N
F077300Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0334982_0001556_11805_12107F000722N/ALVALESSEVTEEQYPETGITEETRRMYPETYSDKYNKVFMQFVDDIFRPNHVPAPKHTHDILLDELAIMYDASMEAGGEQARFNASVLRAAINVIMTCTK
Ga0334982_0001556_12196_12567F011919N/AMQESEADQMNDLQLFAPSRGLGQYREECAIDRNTVIISPSAKPTSVIAALNALPKSGSKRRRVYEYLKQTGGATDEEIERALGISGNTVRPTRGSLVKDKFVYATDLERPTLAGNMAIVWKAR
Ga0334982_0001556_13091_13237F077300AGGAMRNPSEEYDRLHDHCQALGRERDWLKKEVERLTDELYLAHEALRRAFP
Ga0334982_0001556_4243_4869F013988GGAGMAVYTVTEKYLLDNYAVVQLLTPAEIELGASVVIAGVDATFNGTYTVRALPQYLYTGIDTYGDLLYDVNVPIANQVLFAKTAADVQRVAATGTLTITQTCTWVTAANIEDWLGIGTATAADAAFLTVCAAAASQFCWRRRMEAGYVDSLTTVPSQDVFLGTQMYGGALYRQRGSVDQFASFQNMGVTPVMGLNGMIRQLLGIDRPQVA
Ga0334982_0001556_6148_6663F033421GAGMAEGIETRIEVYGLKEALKELNKIDKSLRREITKDYKRITAGLVSDIESAIPLNYPLSGWQRSWSLRGSYQVFPWPTEHKVKAYINTKPPKEFRQNTVNLTTFAIKWIGAAASFFDFSTSNRMGAALTAKYGDSSRVVWRQYEAHKEDLNDAMETLVDRVGKAVGQNLKAQ
Ga0334982_0001556_8064_9356F023058N/AMAGVAVLGSGNYDLEIDTGYDWNAFTLDDDLKGELDNTEYVLDGTSQFASVLDGAISLTAKRGRANTGDQFAYGTMNFTLNDTYADGVFNPFDTTSPYFDPNNNQPGLAPLREVRFSRYSSTNVKELLWVGYIVNYDYTFTLGGLDTVTVNCADFSYQLGQTFLAEWNVTEQLSSERFDDLLDLPEVAYTGTRSIETGVATLGGAAAYTVANGTSVAGYANKINEAEQGRIFVDREGTITFQKRIGTTLGVPVAEFHDDGTQIGYSAIDISFQADTVVNRASIQHAGATSPEVAEDLASQALYLVQTQSITDSLLHNDAAALTLAQYLISPDPEARFNFLGTEFPGTPALDQDTLALLDVGDLINIQKSITTSSGPTQFAQNLTIEGLEHRLTLSAGHAVTYFTSPTTIVYELILDDLVYGTLDEENVLG

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