Scaffold Ga0334982_0000273

Overview

Basic Information

• Taxon OID: 3300033981
• Scaffold ID: Ga0334982_0000273
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31296
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (48.89%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010762	Metagenome	299	Y
F015082	Metagenome / Metatranscriptome	257	Y
F025689	Metagenome	200	Y
F036198	Metagenome / Metatranscriptome	170	Y
F065564	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334982_0000273_16568_16828	F025689	N/A	MENPLVHTMEAQFHGAANAAQLRALHAAADWGGLLEYALLIAEQEASQRSQIHWLAQEASAALRTGLEQWHLDAAEELLRGRRREI
Ga0334982_0000273_18271_18426	F036198	GGAG	MINHKTEQRRDDYLQWLYEQSGRTCCTYTGLHQQRIADLIRRDMAEALGDE
Ga0334982_0000273_18407_18562	F010762	AGGAG	MNETTLDIAFKEWWEASYGRPPGTHAVMTHVAFAAHILDLLELMQDDQPQN
Ga0334982_0000273_21486_21686	F015082	GAG	MTEADIYWTFATAYQHGGGFFQALAAAGMKADPGNKRRLLDAFPELVATYGTASRMHRQLRSGAAV
Ga0334982_0000273_29728_30009	F065564	GGA	MPEIKINVTADDLARLNAEAAAHGMPRAHLIRQRALSGGVVAGLTTAAYHALVADACAFMRGDLNRRHVETLVAYVIAHSHSSQASTGDQSAA