Scaffold Ga0334982_0000224

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0334982_0000224

Scaffold Ga0334982_0000224

Overview

Basic Information
Taxon OID	3300033981 Open in IMG/M
Scaffold ID	Ga0334982_0000224 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	34450
Total Scaffold Genes	43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	34 (79.07%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001360	Metagenome / Metatranscriptome	714	Y
F034078	Metagenome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334982_0000224_25344_26105	F001360	AGGAG	MSLAKFRKVYAKTGSGRFVVSEGIAPAAYILPHVALPTWYLDSEDDRFEIVIPKGTILSVVADANGDARFVPANGSAADQTWGDTIASWDPTNAATPAYSSGSVDTAVTVATLSTPVGVAQYDLYRPFDKGTSQGAGFIVRGYVEYPMVTGVNADLVAGSLVAPDFMGRPRLLSQADAASYPHLMVGKVIEVEKFATNFDDGLLSYMQLPSDPGALKTVYELTRSGSFSGKLGIRANLDVTNVIGAFRVNLTL
Ga0334982_0000224_5129_5542	F034078	AGGA	MSDWKMHLNKNGDFELASFLYKTINNLMKQSLDMGTMLSSDNQKLRAYKEQTKKMFKQKWFDVAQSLEHFDIIQKCTCFSDERESYCEVCKGARYITSSHLSADQMREIGVFTNANQSDDLIARLEKGLQEVLNDLR

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