Scaffold Ga0334982_0000156

Overview

Basic Information

• Taxon OID: 3300033981
• Scaffold ID: Ga0334982_0000156
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40251
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 49 (79.03%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001396	Metagenome / Metatranscriptome	705	Y
F004761	Metagenome / Metatranscriptome	424	Y
F013753	Metagenome / Metatranscriptome	268	Y
F026484	Metagenome / Metatranscriptome	197	Y
F048262	Metagenome	148	N
F080900	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334982_0000156_21693_21992	F048262	GAGG	MMAAPMTDTQESVMELQPLREAVADCIEQLSEQDQFIIDAINSEMISLQKLAERMGVSKPHAWRLRNAAYERLSLLLRSNPYIRERLNLDENEPDYGGI
Ga0334982_0000156_2254_2454	F001396	AGCAGG	MDAVWVPIVVAVITGPVVVVLQKLRRENTEQHAEGRDLLKLVGIKVDKIGSKLDQHIGWHEGRKED
Ga0334982_0000156_3_158	F080900	N/A	LSEIHALTWTLAGTGMVLITLSGQTKTLGWGITFIAILIHLLGVYFKENDE
Ga0334982_0000156_34164_34601	F013753	AGGTGG	MKQNEELTLTQQQQVYVEWLCTAPSERVPATKKAMALELGVDITTLRRWEKKEIFRNAWKDQVDEVQGSPERTQRLLDTLYSKALDGDTKSAQLYLQATNRMVPPSVTISSNKKATELTDAELDSLIAAMAEREKASRSQLKVVV
Ga0334982_0000156_34716_35033	F026484	N/A	MKMATTNDAMYEALSATYPDAGLTLGDLLYAFWSEKGLQYRGTLEYDWYISQGATGTTLGDLANDYFANVYDLVNFSTSDVDEWLELQVFDRWDTVEQEVISLIW
Ga0334982_0000156_7525_8178	F004761	AGG	MVDLDETDLPDSIVDQFAREGFQRIYSLERRWPYLQETYSFNTVANQREYTISTIGDIREIISVVDTSQSGARLTLIPYDNAEEIWLGNTDVPSRPYFYSFWDKKLQLWAKPDAIYPITVRAYRNPLYTWLSDATLTIDLDEWFHALLPYFVIARVYQRQEDSDLSAMYMRSFEEGVGLARRDLMKASSAQPVIMSAGRQYPTMRRWLQTLGATLGQ