Scaffold Ga0334982_0000129

Overview

Basic Information

• Taxon OID: 3300033981
• Scaffold ID: Ga0334982_0000129
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 43433
• Total Scaffold Genes: 77
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 61 (79.22%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005450	Metagenome / Metatranscriptome	400	Y
F019960	Metagenome / Metatranscriptome	226	Y
F050230	Metagenome / Metatranscriptome	145	N
F096674	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334982_0000129_15717_15878	F005450	AGGAG	MDSMKKVAKAEVKAHEKRMHKGMAKGGVTGEAMKKMGRNMARAMNQRGSSRSR
Ga0334982_0000129_28223_28786	F050230	AGG	MNTLLPDIEDDIPLPASATEAMPDLTPQEEIEMRARTIKLVADLNNKSIEPSSEHINQARELAHQMVHNPAHRPDFAKYPNEVMAYLAGMVAQSNCMIVEELSDLKLYVVNKLVAEIENAKDPKARIAALSKLGEVDGVDAFKRRSEVTHKIMSIEEVEKELLETLNTLEDQVIDVEVRETGAGLGT
Ga0334982_0000129_32446_32643	F096674	AGG	MFDLVDEMEWEDVARERGLIVSLEEAGFEEYVEEPLHGQYFSNEGSIYSYTDWFYDGDDQAFSVI
Ga0334982_0000129_6856_7008	F019960	N/A	MAVLLMFFIIMPILAFMYYDMYYATQAAVHEVRKMRELRKEIQLERMYDR