Scaffold Ga0334982_0000125

Overview

Basic Information

• Taxon OID: 3300033981
• Scaffold ID: Ga0334982_0000125
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 43856
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (70.59%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030020	Metagenome	186	Y
F045574	Metagenome	152	N
F076903	Metagenome	117	Y
F100688	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334982_0000125_11280_11585	F076903	GAG	MTDYMLRTDTEAQMDDALEAAGLLVEIDQGDGELVLMPVAGCYVDRIGAIPAKLDPEGEVIRPSDTRFHANIRVTFELTPEQIEALPTFTPEPGIPYRVFA
Ga0334982_0000125_11582_12073	F030020	N/A	VRAIVLVLFLAGCNPVARISSNATAIRNEAGALIDHGNAIGDQVVVQGATRIDEHAAAIHGDIPNVQAITPAWLSTLKWWGIALAVAGVAFVLWQSGAFTAVRIAIGWLPRRKVAAAELAVSTLDPSRPEGDRELVTLLRADPEFDAAFKRAKGRRKTQDDSR
Ga0334982_0000125_14977_15177	F100688	AGGAGG	VNDPGDEHKHRDILERLDLLWPGMGEMANDERREAAREIRSLRDEVRKLRAVLPHRISRILYEGEG
Ga0334982_0000125_20490_21059	F045574	GGAG	MPRHANLPFHLYVHVCNTALGPTMPAGTTRGIWHAVYARPGQIVMAHVLLETGAEWCGVPLHKLAHDPKAFERSPLPGFCEPSHLQPWGAMGDHVEAIHLEYLEGINVMGTSAERGFCGRHTGIVIDWSDGFSRYPQEHKPLNLIERVDGRFILFPNNYCRFLDKHFTSHKRDADLAKYRRGEDVYWEE