Scaffold Ga0334978_0000164

Overview

Basic Information

• Taxon OID: 3300033979
• Scaffold ID: Ga0334978_0000164
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME30Aug2017-rr0003
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 42095
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (35.71%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028149	Metagenome / Metatranscriptome	192	N
F034904	Metagenome / Metatranscriptome	173	N
F042808	Metagenome / Metatranscriptome	157	N
F072266	Metagenome / Metatranscriptome	121	N
F078232	Metagenome / Metatranscriptome	116	N
F083941	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334978_0000164_15205_16293	F034904	N/A	MRKTLAQAKNSTIPQAVGLATCDDRFLQLLNEAQARLADMGKWWGTYKKLRVCVTAGCITWPREVKTIEAMNVCGYNIPIQNQWYEFQTDERAPRTGCGREGCEQDQLLDRGMVTQFRDSVGNCYIRVQPQLTADAGKRVLLQGLDPNGNPIRTLDTVTGEYVWGEYVTLPNPAVTAYVQTVNLFKQPGLTGAQKPLTQGSLTILAYNPTTTLLTQIAVWGPSEQNPEYRRTYLIGMPEVCGGTSGCNAEAQNDCIDHGDGCVPADEACTNTVVEAIVRLDFIPAVVDSDWLFIGNLQAIKHMMKAIQKEDRNQYTEAEREIQLALRSLRNELETYSPNERTVVNVQVWGSAKIQYRLGGFI
Ga0334978_0000164_20651_22690	F042808	N/A	MVAEKNRIVDGLLTAEGGVDSGFSPSLIQPNQLAWAVNTTVRGGFPKARPGIWVKNLTFDDPTVVYNNGYYNAAVKKAFEKGQFQGCGTYIADNTDPFLFASVGGKVFQIDIKNGFKVTDLTPINFTFQVQTRGRVSNVATYVCGVPHGLSPGMVVRLTEPPGAFFPDGFFGDFIVETVPSATTFTTYSPGVDAGPLLGPAFNCYQMATNDPQGSHVYFQQAENWLVIQDGQNQPYLYNGSTLRRATGEEVPVGGPMAYGKGRLWVANGSEYYGGDLVYGDPSYGRDSVIRFTENTFLNEGGAFAVSNGPITGLAFAANLDTSLGDGDLLVFTPTATYAFNAPVDRDVWKDLDYPIQRFALLNFGSFNHESIVAVNGDLIFRAQDGIRSLIYARRDFTEFGNTPISRQVVRALAYDTDFYLTAASAVNFDNRMLMTIQPRKINNRGIVHGGLVVLDFDLVSGMGRKLPPAWEGVWTGVDVFQMLTVRVKRTERCFAFGLNQDYIGLYEVTKNGQFDFDGFDDAPIDWTIETRSLTFAEPTNKKRLVSAEQWYDQVMGDIESKVYFKANEGECWQPWAEFKDCAKYRNCEPGEISCPPAVINCQEVKYYQPPARSRIALPQPPDKCDVQTGGFTRDGYEFQLRYVNTGRFRLKRVAMVAQRLQEDLYGDLSRVACPLLST
Ga0334978_0000164_27850_28113	F072266	N/A	MIQSPKQEFQRDKDRVMELERLLDNANFQAALLAAFNNLCWNLPVSENPQHGWNANCRRQGAKALIEELHGLVTTQRDKPTVKQNLE
Ga0334978_0000164_30232_30438	F083941	N/A	MSEENFHNLEVRIVRLETIIGDKDAGMVSDIHGIKATLEGLKQFQWKLFGGLGVLVVLAQLIGRMTLK
Ga0334978_0000164_32623_33027	F078232	N/A	MPALSSQEIAALSGCFDCLSPGVKESFMLVLLQQIQAASPGAPLTTTSTGGLRTATAASAANPARRRFVIQNQKGEHLHVKFGTGATTTDYHYVLQSAATAGISGSSLTFDGYTGAISVAPVTGNPSYTFAEFV
Ga0334978_0000164_34589_36193	F028149	AGGAG	MAAGNVISCKQFASFLVSQEPVYDKEVLKDIRPFDGMIGYYNTGSFDAYSGTTHRFDRFNSVFPNVTGAWENPTGAACTGQPCDPTENKIGWGWSRNEYSLEKQSWGSDILCFDQIMTKTKAKEHFRQIIDDVLRPATNWITTYYLQRKAAELAGSLVGGNSFACAAGLPPINFSWVGAGYTTLRVTDNAGVAITAASLGRLTPEILQSRVTRQYFLGAIQAGKEGYDSLQLHTDKDTFRYLSKTNASLYDAWRFGVFAPAAKEFYKYGFMGFVGDFMVKVLQFPLRFNATGTAGNYTLVLPYKNVAATEGIKSVFNEDYDKSQYQISYINNPRALRVMPFRPEAVNPNMPFMVRDYGGRWKFATNDLGADCAGKPIDNSRGNKGKFIADFQLAVKPEHPEWLEAIFHKVDRGCIEIIPVCEADPGNPAQSYNSADPVCGVVVQFTAVANDAGNFVIGTTGIMCDDNIVTNAGISEATPAALVTALQTIWDAEFGSASGTWSVVSGNVIQLAGSAIGTTTEVVPCTNVTLEFAI