NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334977_0056511

Scaffold Ga0334977_0056511


Overview

Basic Information
Taxon OID3300033978 Open in IMG/M
Scaffold IDGa0334977_0056511 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME28Sep2014-rr0002
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2170
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037195Metagenome168N
F043895Metagenome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0334977_0056511_1705_2151F043895N/AMKTLTLSLMIFTAETTLIALHQDFDAKLRAISQIESNDNDKAKGRHGELSRYQLKRAVWKQHFPSEKDQRHIPSAARRCAKAHLCWLELRLCVAQRVNNPQPRDVYAAWNIGLEAFSRRDYNFDRLPDSIKQRADRFTNLYTEFRNSQ
Ga0334977_0056511_389_1051F037195AGGAMNIFNTKFPDPPQHNPTELLKQAENLLNKTERKQGWPYYDIKHALQFAQMVIKLSKIPSKKATINTLTLRQQPQTVRARLSQGKAFIVDKGIDVLKGQIDPDDMPLVDELAEKVQISVRKVNLIIELVEPVDNILDAMTPLLGGTDEDPFVFNEDIFREQLLEFINTGEIGSQASWQNYTSSAEKYARQLALQDNTLIIETTPNELIIMKMSEEMLKGLE
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