Scaffold Ga0334977_0013370

Overview

Basic Information

• Taxon OID: 3300033978
• Scaffold ID: Ga0334977_0013370
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME28Sep2014-rr0002
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4676
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041637	Metagenome / Metatranscriptome	159	Y
F100534	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334977_0013370_2159_2671	F100534	GGAG	MADSLDGIVSTTTSLTQTQTDTVGSSARAVSVGKSYPLNSVSGPLSDQLWVSNRSLAVGSTETLDLLALADTIQGATGVQTMRQVRLVRVVNNETITGPRIVVGPSGTNGWGRVAGEVGPGGELLAVQQTHAWGVTTTERGVTIRATGPTGSVSYSIVIAGTATTGPAGY
Ga0334977_0013370_2673_3032	F041637	N/A	MTPDALTAAVTGFLAGARDKARGGLTVAEFGSLTVELIRLAVTGLDTISGMDGPTKKAWAMSCVGSLFDSVADSCVPLVARPAWWIVRPAVRSLVMAAAGGALEQILALTRAANPEPAA