NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334977_0006346

Scaffold Ga0334977_0006346


Overview

Basic Information
Taxon OID3300033978 Open in IMG/M
Scaffold IDGa0334977_0006346 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME28Sep2014-rr0002
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6741
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012111Metagenome283N
F100999Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0334977_0006346_3304_5166F012111AGGMSERAPRRYTDGSVTFEGGIDAGVMPSEVDKNQVAFAVNANFRQGFVSCRPGFVQKDYDLCVTITADNDQITADQTNVTADGWSEDCYGPQSLTGTFQCALPYIADDGRTFILMLISGKVWLYNCLQNNAQSLTTSPDLENPSNLLDGWMVQAENFVVIQDGFSGPLIFNGTSLRRASDDEIKTGKVMAYVNGRIWYALPDGFSFRATDIVYGDGTRASVLKETENTFLNEGGDFAVPSDSGGITAMAVPGDPDTSLGQGPLLVFTPRYVFSVQAPVDRDVWKNLNYPIQAISLLTSGALGSRSAITINGDVFYRAVDGVRSFIIARRSFTDWGNTPISSEMLNVIENDQTNLLWASSAVVFDNRLLMTCQPRYNAEGVIHKALAVLDFDLITSMRKKFPPAWSGIWTGLDVLQIVKTENAYGDQCFCIARGSDDSIQIWEVTKADKFDNNIPDGKKEIEWQVQTRAYNFEVPFGLKRLDSGDLFIDSLEGDVSFNVTYRPDQYPGWIEWTDFSECATTTQCFDLCPIQNFKPQYRPKMRFPTPSDAPCNETISTPARNLYEVQVAMNIIGYCRIKSLRVHAYDIQEPSVGDCRTVFPACTPISACDINPLTYTSESVNP
Ga0334977_0006346_6427_6741F100999AGGMAEQASEHPLIQHKYGIRSPVKIPDLELELYAFRNRLQPNEGGLGTFDHFVNATKMLWPKMSWNPWLEAQVESLCEHDYVGWAGCGASGKTFGATLFATVWWLAN
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