NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334977_0004020

Scaffold Ga0334977_0004020


Overview

Basic Information
Taxon OID3300033978 Open in IMG/M
Scaffold IDGa0334977_0004020 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME28Sep2014-rr0002
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8412
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (19.05%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030086Metagenome186N
F060615Metagenome132N
F076897Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0334977_0004020_3045_3683F076897N/AMNNYLLRNNFIMTKKIVRLTESDLERIVRRVIKESMGVGFMSGEPNGLKIKRMETKEQDATSVSTPDQTKPLLDKSMLVVNQKLPLDRKTLTSMASALKDFDKKLIGGTPYEALQGIWGDDLINSFNKSIATLGYQLGSAGGYKAMMDGRPFGNIMSMAALSAMVNDLLLLRDGLTYLAQVKAGMKVMPSDAVKKALPFFKEFSQKNQLGLA
Ga0334977_0004020_712_2511F060615N/AMYKIFLQEGKKEDAIQKVKEMFSSPEDAEMIDKIFDATSSLGTKFIPFVENETKRYLIDQNTDINDFINLLVNRIRSFIKNNAKITSEVIGTTKELWDGVESRAFPKLDVVLNAPKDINSYNIDTLGYLTQALSMISSKKEKEREAKKEAERVFEDGDVIGIRAITHNASCYYGSGTRWCTAGQQPDYFNKYTKDGKLYYFIDKSNRRQKIALYIKDGDPTVYDAADTGHDVDFLYHVYPEVENFVIEKLLGGGKVKSGFERIKDGTISSWNADRVDPLITSYNRDNEDNVTLNLDFNGRDNDYFDLFEWNEGDGDRMYLDISLSSYGTGEIFDSYYGEEEWKEGYMYSYFDDEQMKRLQTYMKIINPKLYECTLGLKEYGNDDCRIKVSEFLSKTFENAVDNIISEYTYDMNADIEQGIKEYLERDYSNMFAEYGLPMTGTFYKKTVKLNDLIKTYQKYNPKFNVGIYGLLRRIINLENIDPPSIADSVYEFRTNNYEYSSTNSAIEKLLDTMEETINESENITGNYVDHYDFIKKLGGFDEWIDMPGDKRYMLKITDLDMEDDRVTFALQNRETSDFKKMRLPFEKFKDFIYNLQLF
Ga0334977_0004020_7590_7877F030086N/AMKTLLKDPRLYFSLWIVLSIILAITLGACKQKPLIEKGDVVEKFVIDSMVQLPPHSTIELDRKYKYFMSDSSEFTSLRKYNIGDTITYVYKKQGK

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