Scaffold Ga0334977_0001189

Overview

Basic Information

• Taxon OID: 3300033978
• Scaffold ID: Ga0334977_0001189
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME28Sep2014-rr0002
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15225
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (60.87%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002269	Metagenome / Metatranscriptome	576	Y
F008551	Metagenome / Metatranscriptome	331	Y
F015095	Metagenome / Metatranscriptome	257	Y
F023592	Metagenome / Metatranscriptome	209	Y
F027413	Metagenome / Metatranscriptome	194	N
F049626	Metagenome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334977_0001189_2_175	F008551	N/A	DDSSALILAPEAFTVYRSPQAYMSVNVVSNLQVQVAIYGFMATIAKMPNGIVRYLKA
Ga0334977_0001189_5288_6409	F027413	N/A	MEIVNIDNSAFDIDVTDVLTLELKNSSGTYVPVFGGTISDFGISVRSPEEVGFITIGNILAVGSLAKLTKALFPDALPKTEDGNQIYDILNELLINSWFEVAPALQWQDYDPTTTWANAENVGLGEIDQPGLYEMISRSADPFSSYNLCAQIAQSALGNIYEDKQGRVCYADGDHRTAYLSANGYTTLSANYAIPSSVKSILQIGKIRNSLVFNYGNNYNNQATALDADSIANYGRYQRSVSSNLHNLSDVNDVMDRELGLRAIPREQLQAITFRLDNADLPDAERNKLINVFFGEPIVINDLPINMFNGSFNGFLEGFAIRATPQFVDITLTLSPTDFSLVAPQWDTVSPPSLIWTGVNATLEWENAFGGLT
Ga0334977_0001189_7982_8179	F002269	AGG	MEQEMKEQVIAAAKSYGRAAIASAAALYMSGISDPKVLANAFIAGLIGPLLKALQPSEGQFGVTK
Ga0334977_0001189_8179_8415	F015095	N/A	MEGAQLVVGIAVGSCTILGLGAGLVRHLVKYYLSELRPDGNGGHNLRGRIDHMESRVERMDSKIDKIYEILLETRLAK
Ga0334977_0001189_8520_8669	F023592	N/A	MDILIGLAACGMGFMFMVIGYSIGFKHGHGEGFVRGRAIAKALKESELI
Ga0334977_0001189_9886_10074	F049626	GAGG	MALCRLQGLMTTYKFECRKCKKVTDQIERIITDNLPPNVKTLQCTKCGVMGVCLMESADADV