NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334977_0000698

Scaffold Ga0334977_0000698


Overview

Basic Information
Taxon OID3300033978 Open in IMG/M
Scaffold IDGa0334977_0000698 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME28Sep2014-rr0002
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19669
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)30 (69.77%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Associated Families8

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000354Metagenome / Metatranscriptome1244Y
F002052Metagenome / Metatranscriptome599Y
F009599Metagenome / Metatranscriptome315Y
F010749Metagenome / Metatranscriptome299Y
F011368Metagenome291Y
F019470Metagenome / Metatranscriptome229Y
F020159Metagenome / Metatranscriptome225Y
F021758Metagenome / Metatranscriptome217Y

Sequences

Protein IDFamilyRBSSequence
Ga0334977_0000698_10109_10402F021758AGAAGGMKVIKLDRRYSGYGVWTHRTNSGHWYGEEARAQGLMAFYEMRCYMTQMNGPGCFIHEAWAIKKAGRAVPEWAWDTDGNVFFRDSALVNFTLAKDRWL
Ga0334977_0000698_11270_11500F010749N/AMKKFTFWRNAIISEIYVVDAATEEEAREMLQAGEVEVFSEEWMDWATDDFELEHVEIIDPLYRMVKDYESVDKLSN
Ga0334977_0000698_12943_13092F020159AGGAGMIELILAFVAGMIVMDFMYAWRMGIPQMLWYRFKHRNDPKPNFREWSED
Ga0334977_0000698_4471_4740F011368N/AMNHSLQHRDLAGHHLSPGDHCLVTEHNRIILARVLKLYDASNQLQLQPLSSDAGGRRSRPSQKPIRRECYNVYKIADTEITMSILRGAI
Ga0334977_0000698_5067_5291F009599GAGGMIRLEGLSKQDVQICTLLWNCDTVEAVEVLVNAMPAAYKQRAVTMRELMTAAQLDTIEDIDEDITAYLQHISSR
Ga0334977_0000698_6503_6889F000354AGGAGMAKVNYDNFASFDINECCDYFDSEKQSNWKKIGKFIVADGQDYVNIMEQEFDFEDTADGEYAAFDAGVKYALTKMNIAFEAAGLDLQICSVDLVESMGFVLVRTDDEPEDFVKRVLKKPVMMVESWVD
Ga0334977_0000698_6971_7156F019470AGTAGMIQALQALPQDAELVVTESGYYCYGELATIMLPEAYTIEGEDEEVARGTQVYRIGHSHQS
Ga0334977_0000698_9936_10118F002052AGGAMVMREYQFVFNVVCAGNGTPDMARVEEMIDLSMQDLVFDDEFITALDEKESVTIQVNLVK

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