Basic Information | |
---|---|
Taxon OID | 3300033978 Open in IMG/M |
Scaffold ID | Ga0334977_0000698 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME28Sep2014-rr0002 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 19669 |
Total Scaffold Genes | 43 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 30 (69.77%) |
Novel Protein Genes | 8 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (75.00%) |
Associated Families | 8 |
Taxonomy | |
---|---|
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000354 | Metagenome / Metatranscriptome | 1244 | Y |
F002052 | Metagenome / Metatranscriptome | 599 | Y |
F009599 | Metagenome / Metatranscriptome | 315 | Y |
F010749 | Metagenome / Metatranscriptome | 299 | Y |
F011368 | Metagenome | 291 | Y |
F019470 | Metagenome / Metatranscriptome | 229 | Y |
F020159 | Metagenome / Metatranscriptome | 225 | Y |
F021758 | Metagenome / Metatranscriptome | 217 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0334977_0000698_10109_10402 | F021758 | AGAAGG | MKVIKLDRRYSGYGVWTHRTNSGHWYGEEARAQGLMAFYEMRCYMTQMNGPGCFIHEAWAIKKAGRAVPEWAWDTDGNVFFRDSALVNFTLAKDRWL |
Ga0334977_0000698_11270_11500 | F010749 | N/A | MKKFTFWRNAIISEIYVVDAATEEEAREMLQAGEVEVFSEEWMDWATDDFELEHVEIIDPLYRMVKDYESVDKLSN |
Ga0334977_0000698_12943_13092 | F020159 | AGGAG | MIELILAFVAGMIVMDFMYAWRMGIPQMLWYRFKHRNDPKPNFREWSED |
Ga0334977_0000698_4471_4740 | F011368 | N/A | MNHSLQHRDLAGHHLSPGDHCLVTEHNRIILARVLKLYDASNQLQLQPLSSDAGGRRSRPSQKPIRRECYNVYKIADTEITMSILRGAI |
Ga0334977_0000698_5067_5291 | F009599 | GAGG | MIRLEGLSKQDVQICTLLWNCDTVEAVEVLVNAMPAAYKQRAVTMRELMTAAQLDTIEDIDEDITAYLQHISSR |
Ga0334977_0000698_6503_6889 | F000354 | AGGAG | MAKVNYDNFASFDINECCDYFDSEKQSNWKKIGKFIVADGQDYVNIMEQEFDFEDTADGEYAAFDAGVKYALTKMNIAFEAAGLDLQICSVDLVESMGFVLVRTDDEPEDFVKRVLKKPVMMVESWVD |
Ga0334977_0000698_6971_7156 | F019470 | AGTAG | MIQALQALPQDAELVVTESGYYCYGELATIMLPEAYTIEGEDEEVARGTQVYRIGHSHQS |
Ga0334977_0000698_9936_10118 | F002052 | AGGA | MVMREYQFVFNVVCAGNGTPDMARVEEMIDLSMQDLVFDDEFITALDEKESVTIQVNLVK |
⦗Top⦘ |