Scaffold Ga0334977_0000698

Overview

Basic Information

• Taxon OID: 3300033978
• Scaffold ID: Ga0334977_0000698
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME28Sep2014-rr0002
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19669
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (69.77%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000354	Metagenome / Metatranscriptome	1244	Y
F002052	Metagenome / Metatranscriptome	599	Y
F009599	Metagenome / Metatranscriptome	315	Y
F010749	Metagenome / Metatranscriptome	299	Y
F011368	Metagenome	291	Y
F019470	Metagenome / Metatranscriptome	229	Y
F020159	Metagenome / Metatranscriptome	225	Y
F021758	Metagenome / Metatranscriptome	217	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334977_0000698_10109_10402	F021758	AGAAGG	MKVIKLDRRYSGYGVWTHRTNSGHWYGEEARAQGLMAFYEMRCYMTQMNGPGCFIHEAWAIKKAGRAVPEWAWDTDGNVFFRDSALVNFTLAKDRWL
Ga0334977_0000698_11270_11500	F010749	N/A	MKKFTFWRNAIISEIYVVDAATEEEAREMLQAGEVEVFSEEWMDWATDDFELEHVEIIDPLYRMVKDYESVDKLSN
Ga0334977_0000698_12943_13092	F020159	AGGAG	MIELILAFVAGMIVMDFMYAWRMGIPQMLWYRFKHRNDPKPNFREWSED
Ga0334977_0000698_4471_4740	F011368	N/A	MNHSLQHRDLAGHHLSPGDHCLVTEHNRIILARVLKLYDASNQLQLQPLSSDAGGRRSRPSQKPIRRECYNVYKIADTEITMSILRGAI
Ga0334977_0000698_5067_5291	F009599	GAGG	MIRLEGLSKQDVQICTLLWNCDTVEAVEVLVNAMPAAYKQRAVTMRELMTAAQLDTIEDIDEDITAYLQHISSR
Ga0334977_0000698_6503_6889	F000354	AGGAG	MAKVNYDNFASFDINECCDYFDSEKQSNWKKIGKFIVADGQDYVNIMEQEFDFEDTADGEYAAFDAGVKYALTKMNIAFEAAGLDLQICSVDLVESMGFVLVRTDDEPEDFVKRVLKKPVMMVESWVD
Ga0334977_0000698_6971_7156	F019470	AGTAG	MIQALQALPQDAELVVTESGYYCYGELATIMLPEAYTIEGEDEEVARGTQVYRIGHSHQS
Ga0334977_0000698_9936_10118	F002052	AGGA	MVMREYQFVFNVVCAGNGTPDMARVEEMIDLSMQDLVFDDEFITALDEKESVTIQVNLVK