Scaffold Ga0334977_0000466

Overview

Basic Information

• Taxon OID: 3300033978
• Scaffold ID: Ga0334977_0000466
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME28Sep2014-rr0002
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25251
• Total Scaffold Genes: 68
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (52.94%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012023	Metagenome / Metatranscriptome	284	Y
F024537	Metagenome / Metatranscriptome	205	Y
F032277	Metagenome / Metatranscriptome	180	Y
F088339	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334977_0000466_13453_13713	F024537	AGG	MKNLEQEILDELGTKMQSEIDREILWGMLVGMGWRRVMLDRLTDNNHAVDITYWLEANCKNPFERNGADFIFESEVDAVNFTLRWQ
Ga0334977_0000466_16882_17016	F088339	AGGAG	MLFEAFLVFWMLEVLVLVSVAVWYYHKPKVQEKKIHDPWGFWKE
Ga0334977_0000466_17425_17583	F032277	AGGAGG	MINAVASLLLAGMLSNEPRCVKWTWSGDVYNRRVVCVEWSKPPPKDKAPKKA
Ga0334977_0000466_9178_9351	F012023	AGG	MEQIDYEKLNERIVEQAYETAFGEMTQEQLQKLIQDKFERARIYREALAQAPMYSVN