NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314861_0153201

Scaffold Ga0314861_0153201


Overview

Basic Information
Taxon OID3300033977 Open in IMG/M
Scaffold IDGa0314861_0153201 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1124
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NamePeru: Loreto
CoordinatesLat. (o)-4.0712Long. (o)-73.2029Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016632Metagenome / Metatranscriptome245Y
F027079Metagenome / Metatranscriptome195Y
F047437Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0314861_0153201_1_366F047437N/AKLGWHWRRLKWAVASASEAAQGHEANGVRPGSQEFKTLYDEVAKKVQEYSHESGAPIDTLKANLPAFCAIERLAHPDPVAPHTKLGLTLGIIIAAVLGSIGMGALIGLATGMAHWIAHLF
Ga0314861_0153201_378_710F016632AGGAGGLTGILETFALVEVGSAIGFLATWRNKVLNAKVNFFRPPDNRPSPFDKVLRGKAGRAVTRQDRLRLKIADRLVNLIRKLVQYEAFRHVVRGLALAHSPLRQALRKKGGGPW
Ga0314861_0153201_707_910F027079AGGAGGVIKAFLNLCLILFLDMLAYMVAIVAAAAVAWAVVCGARWIFAGFQKAVMALRASLWKERFEQAGEEV
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