Scaffold Ga0314861_0009261

Overview

Basic Information

• Taxon OID: 3300033977
• Scaffold ID: Ga0314861_0009261
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7238
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Peru: Loreto
• Coordinates
  • Lat. (^o): -4.0712
  • Long. (^o): -73.2029
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022139	Metagenome / Metatranscriptome	215	Y
F040432	Metagenome / Metatranscriptome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0009261_5395_6324	F022139	N/A	VKATFVSSLESNDCDRGQFGVFRRIGRSTFLEIAERSGKPARTERPPLSPRESIGDEIELGGKNEARKDPVVWTPELDAIIREGYSQGWLGARNAINKIQRLHPKWRSLHVWERAKELGFDQRFVQECPPWSAADDAYLLDYAQEQSVKTIARMLHRSEKAVRWRLAKLGASCKVEDNYSQKELAKDLRVSPRTVRRWEAAGFLERREGRITHESLQEFCRKHASEIDYHALDREMQRWLKDCMGLVPAQKQPKNGNANLKHLQRVGVCPSCGRKTRGNAHGRHAEACSRKNGSSNSFRVLGNYEAAAS
Ga0314861_0009261_6516_7127	F040432	GGA	MDENWPLFVATITGRAPTENEARLLEASRRLWPAALTAVKKQVFDQAGLSSDPKSIATARWEEALSSTLRTMSKLKGTKISDLDSYLFAIFLHRLNRYLAQERKRQQIVEFLSGSDDLASLEGAKDTSWMEKIESRIALQQALARTDRCFRAMAWYYSQDFSWKEIGTLFGLRKEQARQRFEYGIRKLRKWLQRPPEEHSGPE