Scaffold Ga0314861_0007458

Overview

Basic Information

• Taxon OID: 3300033977
• Scaffold ID: Ga0314861_0007458
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8481
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Peru: Loreto
• Coordinates
  • Lat. (^o): -4.0712
  • Long. (^o): -73.2029
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005112	Metagenome / Metatranscriptome	411	Y
F020126	Metagenome	225	Y
F020481	Metagenome / Metatranscriptome	223	Y
F039911	Metagenome / Metatranscriptome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0007458_5885_6019	F020126	GAGG	MNRLANLALSVGETLLHEAGRLLFGIALGAAKQALGTPQPLGTS
Ga0314861_0007458_6842_7237	F005112	AGGAG	MSLVVKYKLFWAACIAALCGLAFWKNSRSYPMKPKLWRLGKSAIDTGLVLLLVLYAPALLLMYVVIWLTSPFKNKIMRSTAAFASILAVSHLAGIVFEAVAVFGVFAVDLLTGQVVARMDRRNRKEVAKAA
Ga0314861_0007458_7496_7684	F039911	AGGAG	MKYTIAVLLAVVAAVAGYFGIRRLTHKDLGFTPVKRNASKLAKTLLHTEATAAQEAGAAPTA
Ga0314861_0007458_7853_8473	F020481	N/A	LYFTPDINKPHQKWSVLEDPENPRGSLLYRHYRESGEKPDVKRSFGISEVSPVLEHYAARAGIEYCRLSLGRQRVHFDAVLVLVQSRLGMEIPGDGRWYPVIPWVRDDGFSAVLMREPIPYEEACHLFGFDIPAAKPSVPKRIKRHLARGRIALFGSQAEVRQLNEYDCVHRVTLADGVTSFQTAVHDPGPRWPEAWTSGAALAVR