Scaffold Ga0314861

Basic Information
Taxon OID	3300033977 Open in IMG/M
Scaffold ID	Ga0314861_0006442 Open in IMG/M
Source Dataset Name	Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033977 Open in IMG/M

Scaffold ID

Ga0314861_0006442 Open in IMG/M

Source Dataset Name

Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9429
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (66.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

9429

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (66.67%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location Name	Peru: Loreto
Coordinates	Lat. (^o)	-4.0712	Long. (^o)	-73.2029	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Peru: Loreto

Coordinates

Lat. (^o)

-4.0712

Long. (^o)

-73.2029

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F022139	Metagenome / Metatranscriptome	215	Y
F027097	Metagenome / Metatranscriptome	195	Y
F038963	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0006442_3153_4097	F038963	GGA	MARREADREARRIPWQRLQEARQQYVEWNAFSLWARAIAEAEGQVPAWLLKVLKERCPGLFGSDRTCKIAHQDPPLNRRILEWVESNTLAQAKDEGWLRALTFYAARVPEYMRDCAYWQHCETQWKRQHPSAYPSFEEWRKASEQCADEVLDAFEMTEDKRQIIKASRMVGPERLAAAVAQYMEWEAFTYWLRSPLESDSKFPDAVAKELQRRCPGFLESDEVLRSTLSPEDYTRRWKALLEWGANRFFSKMQREGWFDAVMYEARAHPRSVRTVDYWVFYWDEHWSSCPLKAYPSFQEWRRTADNFVVGSGGE
Ga0314861_0006442_4031_4894	F022139	AGG	MRGQGNGNEDHGLTGVAAVTDSKRDPVVWSPELDAIIREGYARGCSGAREAINKIQRLHPKWRSHNIWGRAKELGFDQKYVQERPPWSAADDALLLDFAQEQSVKTIARLLHRSEATVRWRFAELGASSRVRDNYTQEELARDLRVSPKTVRRWEAAGFLERRDGRITHESLEEFCRKHASEINCDALDREMQRWLKDCVGFVPAQKQPKNGNGSLKHLQKVGVCPWCSRKTCGNAHGRHVKACARKNGSNKGLQAPGSHVHTPLTHSPPDPTTKLSAVRRHSWNEG
Ga0314861_0006442_5495_5995	F027097	N/A	VLSYARRYGQDSSIAADILEAVLLAISRARRASRMLGNPIRNLDSYLYVAFVRRLNRHVARQPKIQFVGSLQDLDAFSGIHTRGSRSTVEDELLVGELLQYMTGRPRDMFFLRTSGYSWKEVARFLGTTANSAQVLFNKGIGTARSRIMKLKASTRWPSEGGEANA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0314861_0006442

Overview

Ecosystem & Geography

Associated Families

Sequences