Scaffold Ga0314861_0005190

Overview

Basic Information

• Taxon OID: 3300033977
• Scaffold ID: Ga0314861_0005190
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11000
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Peru: Loreto
• Coordinates
  • Lat. (^o): -4.0712
  • Long. (^o): -73.2029
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007097	Metagenome / Metatranscriptome	357	Y
F016487	Metagenome	246	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0005190_2969_3454	F007097	AGGA	MSQLTLSSIPGFFDLVDSAIAAGQPLTDDSMLKISHNAKFGTVRSKLIFMGFYANGNTVPTPIDPDDGYAYSRAECQFIWMIYSNRAPAPGFVPGQAAPPVQANSQSGQLYNFPGGWDINDATGVITLRTTYWQNGTEVVTNDGIIKVYAVCLRLSLNSAN
Ga0314861_0005190_8554_8736	F016487	N/A	LIQGNQIWTQALAQLQKQAYYMVEIPDFAIAIASFPATAQVVTTLSGYGVTLYGVGGYGT