Scaffold Ga0314861_0004070

Overview

Basic Information

• Taxon OID: 3300033977
• Scaffold ID: Ga0314861_0004070
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13219
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (65.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Peru: Loreto
• Coordinates
  • Lat. (^o): -4.0712
  • Long. (^o): -73.2029
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018304	Metagenome	235	Y
F029003	Metagenome / Metatranscriptome	189	Y
F039914	Metagenome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0004070_2328_2888	F018304	AGAAG	MKNGIYVSRLKYAANFDHKAVVSGIARTYSQRGITVKSQPALPGGKHADLAVSLGNAWTYIEVKTRAHGASRRIRQLSYRQDFLREILRLRAHSLKQLPRKESSLVVLSTSLSPNRRKAISKIALARSFTNRIFDHDNEKILGLMIFAPFRGSASSSPTWQYASTLIPNPNVERSDRLDELASVQL
Ga0314861_0004070_5781_6074	F039914	GAG	MGETAGTSDFRSRELAVAGNFFFCEVCNLVCEYGDPLWQEHQAQLRFHKMKRMLLLRCAKCGTVVVDAYAEYSPERNQFWCKNCIGQAGYLKFRSTA
Ga0314861_0004070_9955_10188	F029003	GAGG	VIDQMQRRSGPGSCEVCGREAATRRAKFNAQYLQSTSAAVFEEENLVGAQLEKRVCENCLKKLQEAKNVTDLTFERL