Scaffold Ga0314861_0003400

Overview

Basic Information

• Taxon OID: 3300033977
• Scaffold ID: Ga0314861_0003400
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15176
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (57.89%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Peru: Loreto
• Coordinates
  • Lat. (^o): -4.0712
  • Long. (^o): -73.2029
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002761	Metagenome / Metatranscriptome	531	Y
F016631	Metagenome	245	Y
F016632	Metagenome / Metatranscriptome	245	Y
F027079	Metagenome / Metatranscriptome	195	Y
F039911	Metagenome / Metatranscriptome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0003400_10239_11843	F016631	GAGG	MNRLANLGLSVGETLFHEAGRLLFGIALGAAKQLLGTPQQVGTRNLAFPRALQKKTVDGALLAGPRTQKEYAKLALKKGLPTEQRPRALAVENAPHSVDDFSGVIEEGYGKGQKKLIYSGTGVIKVGGSWQLGKINVHAHDAEKAGLHYDFVAEGVDPHTESFEVNIPNGVLKGRYAFRQAFEKGHYLVLRMKDNSALVEKPDIHLKPQEFLSTISQSGRPVSVEWKDDGSLANVAIHNLRAVYRSHRPEGEPYYDKLPAIEDVSNHSPVWLARKLFPGPEQEGTVLRGELHHPDGAARVGGIVNALPEKAIQIMRERGPVEFYAWDIAKFRGRDVRRMPYGERRELYEGVIEEIRLFNKDFHEVPAMPEDGDPVKFYQAIINDARGLPYSEGVVVKYKDAVDEWFKVKANDTLDVKVVRCIEGTGKFTRSLGAMVVEGPTGVESEIGSFQLTNEQRQWIWDHRDVLTGQIAEVRAMTVNASGAIRAGVFVRFHPSGSEAGLLMYSEGLAEADPKESKSILYRLKSAAGWRRKA
Ga0314861_0003400_12831_13010	F039911	AGGAG	MKYTIAVLLTVVAAVAGYSGLRRLTHKDLGFTPVKRYATKLAKILLHTEATAAEEAGVV
Ga0314861_0003400_14101_14427	F002761	AGGGGG	MVFTPSSTGSFTAGAVFWSMVWAGLGKLNELARFVGFKRSKPRESALRWINSHKVIALTATEVVNYSVHGVSSPLGVTFALGGTIVNVLMVTFVVPIWCRLSRLESRL
Ga0314861_0003400_14655_14855	F027079	AGGAGG	VIKSFLNLCLILFLDTLAYMVAIVAAAAVTWAAVCGARWIFGVLQNALMALWARRRKKEMSAHATR
Ga0314861_0003400_14852_15172	F016632	N/A	LETFALVEVGSAIGFLASWRNKVLNAKVNFFRQPHNRRSPFDKVLRGKAGRAVTRQDRLRLQLADGLVNLIRNLVQYEAFRQLVRGLALAHSPMRQALRKKGGRPW