Scaffold Ga0314861_0002048

Overview

Basic Information

• Taxon OID: 3300033977
• Scaffold ID: Ga0314861_0002048
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22971
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (69.57%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Peru: Loreto
• Coordinates
  • Lat. (^o): -4.0712
  • Long. (^o): -73.2029
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007097	Metagenome / Metatranscriptome	357	Y
F008672	Metagenome	329	Y
F010661	Metagenome	300	Y
F011724	Metagenome	287	Y
F016487	Metagenome	246	Y
F042698	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0002048_10073_10594	F010661	AGCAGG	MEKPNGIATAADFRQLAEGAAWTDPERVQLPGSGLGVMLRRPTKFYWALRRSEWPRELREKLDLVGVGVRPELTVEETLLLVREDQQMVNEAFVNPKPSLDPGVTQFDPRWLPKEDAEFILKYLRGQVLANGQDLEAFRPSEQGDSAGSGTDGAYVREDSQRDIMPRRGGLAS
Ga0314861_0002048_12221_12403	F016487	N/A	LIQGNQTWQLALAQPQKQAFYMVEIPDFSIAIASFTASAQAATIPHGYGVVLYGVGLYGT
Ga0314861_0002048_16902_17387	F007097	AGGTGG	MSQLTLSVIPGFFDLADSAIAAGQPLTDDSMLKISHNAKFGAVRSKLIFMGFYANGNTVPTPIDPDDGYAYSRAECQFIWMIYSNRSPAPGFVPGQASPPAQSTSQPGQLYNFPGGWDINDATGLVTFRTTYWQNGSEVVNNDGIVKVYAVCLRLSLNSAN
Ga0314861_0002048_7591_7884	F042698	GGAGG	MAISVSSASPDILVDNRGYFPDLVTLTITGMTANATNAVPHGLPRTPKRVWFTGVGSGVNAAACSLDTSTVAAGFDGTNLYIYTPASVTSVLAHVEY
Ga0314861_0002048_7979_8455	F011724	AGG	MAYCTVDDVCTAFPRFVRNATGSVQDTQIQGWIDDRKARIRAALVARNIDPDAETPTSDQAAFLRALNRDGAIADLGDALQGGLALQPSEYSLAGSRRQSFERQIKEIKEGLYDALFSTLARHVEIEPLLGGIGGGETDRSTAFDRGENKAFSKNQTF
Ga0314861_0002048_8536_9090	F008672	N/A	MWTSYYNAGLSKQVVRQLLAVVNRDIQAALDFVSGIPGSYAPFAEYDLALLPVQQFPAILLAPDTVTFDEEANSTLHQTMRLTCVIAVTHQDRNTLAEVSQDYVRAVRAVLDTLWESTPGDFLLTNLPLPSPPFPSGALSPGLASGKLMKIFAEGHTFEEIRRRPQSGFAMAATISIMVEIEEI