Scaffold Ga0314861_0001882

Overview

Basic Information

• Taxon OID: 3300033977
• Scaffold ID: Ga0314861_0001882
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24709
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (84.85%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Peru: Loreto
• Coordinates
  • Lat. (^o): -4.0712
  • Long. (^o): -73.2029
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002761	Metagenome / Metatranscriptome	531	Y
F003859	Metagenome	464	Y
F005112	Metagenome / Metatranscriptome	411	Y
F016632	Metagenome / Metatranscriptome	245	Y
F022840	Metagenome	212	Y
F027079	Metagenome / Metatranscriptome	195	Y
F028392	Metagenome	191	Y
F039911	Metagenome / Metatranscriptome	162	Y
F057060	Metagenome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0001882_12445_12840	F005112	AGGAG	MSLAVKYKLFWAGCIATLCGLAFWKNSKSYPGKPRLWRLGKSAIDTGLVLLLVLYAPALLLVYVVIWLTSPFKNKIMQSTAAFASILAVSHLAGIVFEAVAVLGVFAVDLVTGQVVARMDRRNRKEVAKAA
Ga0314861_0001882_13019_13207	F039911	AGGAG	MKYTIAVLLTVAAAAAGYFGLRRLTNKDLGFTPVKRYATKLAKTLIHTEATAAQEAGTAPAA
Ga0314861_0001882_13271_13600	F002761	AGG	MTFTPSATSSFTAGAVFWSMVWAGLGKLDELARFVGFQRSKPRESALRWINSHKVITLTATEVVNYSVHGISSPLGVTFALGGTIVNVLMVTFVVPIWCRLSKLESRLS
Ga0314861_0001882_13905_14108	F027079	AGGAGG	VIKAFLNLCLILFLDTLAYMIAIVAAAAVAWAAVCGARWIFAGFQKAVMALRAGLRKERFEQAGEEV
Ga0314861_0001882_14105_14437	F016632	AGGAGG	LTGILETFALVEVGTAIGFLATWRTKVLNAKVNFFRPPDNRPSPFDKVLRGKAGRAVTRQDRLRLKIADRLVNLIRKLVQYEAFRQVVRGLALAHSPLRQALRKKGGGPW
Ga0314861_0001882_14449_14907	F003859	AGGAG	MDELNAQQGTRAEDVSASDYSLPRVSLYKSLKLGWHWRRLKWAVAAASEAAQGHEANGVRPGSQEFKTLYDQVAKKVQEFSHESGDPIDTLKTNLPAFCAIERLAHPDPVAPHTKLGLTLGIIIAAVLGSIGMGALIGLATGVAHWIAHLFT
Ga0314861_0001882_15071_15496	F028392	AGGA	MEDLPMPNTIAVVHLPEALRDGNSALVKLAGKIDSFSLVLQRTPECQLKRQIEKEYHAMVFTTRKEVRKYCPKYRYFPGEGILDFSTDCASGQLEPGDLGKPPQPKRGRLCQECCFFLGEPEEQFPATTVSGIPKDLAPLA
Ga0314861_0001882_15946_19059	F057060	AGGAGG	MANHQELYFTPDIAKPYQKWSVLEDPERPGRRLIYRHYRQPGEKPDVRTSFGFSELSPVLEHYAAKAGIEYSRLSLRRQTDSFGLALDLVQSSLGLDVEGTTWYPVIPWVRDEGFCAVLMREPIPFEEACHLFGFDIPAAKPSVPKRIKRHLARGRTALFAREAEVRQLNQYDCVHRVLLADGVTSFETAVYDPGPRWPEAWTSGAALASRRGGALLTGHPVQIGDLIQITGALPTGQIKAHCLIWDVDYDLVVFDIKKELRAWNGQAYFSVLNELHGCPANLDVQTASNLDLAKVRDQKLIQYLSQEFACDVFELMKDDECVKEEIGFYNPDGWVDEEGNLVMNENRWKLWRMYAAGLPAMQFRHCRDAFYRTQMESPQNSDPDRFRIHFREPKDLMTVQPQELAGAGVRKYIFPEPFVFDRQGYPHWERSTLPDVNSVYLGGFEGEFISLRNPNASHKESGKLRGRRSQQFADIDRGAVMFVHLGFAASPEGTPGLGKSFNGADFDDSVLALLDPEIVAHWKTLQDYPQVVATPTQIMVIDDGDALFDRHPEVERYDHEYVIRMIVDARDGQMGIGYVVNAIVWFNLLWLNRRSILDQLRVMEPSTKVLDAIRWMEHDLSQSQMPMIASRLEEIIDSIKMNGKSVEWANGVITEFRNTCPVAPKFWWQGGFQGQGRIPRHRLGNGNEPIAVTTAMDVAREEWVEIFKKARKFADKESWKRCWRVPLEIRTFPTRPEAATAARDFWLLYNRTREAKKLEFLKAGKDHRGKQVTNEQEASLAAYLFAEEDIHNRIKASGMYLEIYAELVKLVFDRELTLEPPRSPDGSVKPVADGILGGLHTLDGFLDMARAAGVTRKYVPITWESDQARADYGHLNLDVVVEDTLVRMVGSTPNPASWLGIVDVPDGQYRLEHGLLATEDHSETPPQPATVALPAVNGFEQRLKDITLKQQDRQKIEQELKLFQDQVGQRVTVKPVIYHNPKTRQDEPAAQVFLQGKSEPLCWISRAHLSAVTRELTGILVSNGKYSLTAICTLPN
Ga0314861_0001882_4104_4295	F022840	GGAGG	MQDQTITITIDEQGHSTLDLEGFAGRGCEKVFEDFRGGDRVKIERKKPAYYTGQQFQLEKSQH