NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314861_0001237

Scaffold Ga0314861_0001237


Overview

Basic Information
Taxon OID3300033977 Open in IMG/M
Scaffold IDGa0314861_0001237 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34549
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (68.42%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NamePeru: Loreto
CoordinatesLat. (o)-4.0712Long. (o)-73.2029Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003571Metagenome / Metatranscriptome479Y
F089714Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0314861_0001237_18901_19176F003571N/AMTLNLKPDIAARLEALASAQGISVDDHLRQLVERELSVATAEASASEGSGMVWENGLLVYRTGKPLAPRVVDEAIRQSREERARHILDDPH
Ga0314861_0001237_31936_32313F089714GGGGGVSSEDWERLAENPKFLQVDHRADQVVLTDDSDHAHTLYLDGKKHEEKDASGKKVSTKTEWQGNTLVAETKLSHSSKLTQTFRLSDDGKQLEVTSRLENPSLQGPVSIRRVYDLLGATTQQGAAPK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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