NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314861_0001070

Scaffold Ga0314861_0001070


Overview

Basic Information
Taxon OID3300033977 Open in IMG/M
Scaffold IDGa0314861_0001070 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)38373
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (78.26%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Associated Families10

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NamePeru: Loreto
CoordinatesLat. (o)-4.0712Long. (o)-73.2029Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002761Metagenome / Metatranscriptome531Y
F003859Metagenome464Y
F005112Metagenome / Metatranscriptome411Y
F016632Metagenome / Metatranscriptome245Y
F025427Metagenome / Metatranscriptome201Y
F027079Metagenome / Metatranscriptome195Y
F028392Metagenome191Y
F039911Metagenome / Metatranscriptome162Y
F057060Metagenome136Y
F057933Metagenome / Metatranscriptome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0314861_0001070_20607_23723F057060AGGAGGMPNRQELYSTPDIRKPHQKWSVLEDPERPGRRPIFRHYRQPGEKPDARTSFGSSELSPVLEHYAAKAGIEYSRISLGRQSDSFDLALALVQSGLGLEITGDGTWYPVIPWVRDDGFCAVLMREPIPYEEACHLFGFDIPAAKPSVPKRIKRHLARGRTALFGSEAEVRQLNECDSVHRVTLADGVTSFETAVYDPGPRWPEAWTSGAALASRRGGTLLTGHPVQIGDLIQITGALPTGQIKAHCLIWDVAYDLVVFDIKKELRAWNGQAYFSVLNELHGSPANLDVQTASNLDLAKVRDQKLIQFLSQEFARDVFELMRHDERVKEEIGFYNPDGWVDEEGNLVEDENRWKLWRMYAAGLPAMQFRHCRDAFYRTQMESPHNSDPDRFRIHFREPKDLMTAKPQELAGAAVRKYIFPEPFVFDRQGYPHWERSTLPDVNSVYLGGFEGEFISLRNPNASHKESGKLRGRRLRHFADIDRGAVMFVHLGFAASPEGTPGLGKSFNGADFDDSVLALIDPAIVAHWKTLQDYPHAVATPTQVMVIDDGDALFDRHPEVERYDGEYVIRMIVDARDGQMGIGCVVNAIVWFNLLWLNRRSILEQLRAMEPSNKVLEAIRWMEHDLPKSQMPMIASRLEEIIDSIKMNGKSVEWANGVITEFRNTCPVAPKFWWQGGFQGQGRIPRHRLGNGNEPIAVTTAMDVAREEWVEMFKKARKFADKESWKRCWRVPLEIRTFPTRPEAATAARDFWLLYNRTREAKKVEFLKAGKDHRGKRVAGEQDASLSAYLFAEEDVHNRIKASGMYLEIYAELVKLVFDRELTLEPPRNPDGSVKPVPDGILGGPHTLDGFLDMARAARVTRKYVPITWESDRAHADYGHLNLDVVVEDTLVRMVGSTPNPASWLGIVDVPDGQYRLEHGLLATEDDGEPAPQAATVALPAVNGFEQRLKDITLKQQDRQKIEQELKLFQDQVGQRVTVKPVIYHNPKTRQDEPAAQVFLQGKSEPLCWISRQHLSAVTRELSGILVSNGKYSLTAICTLPN
Ga0314861_0001070_24190_24600F028392AGGAGGMPDTIAAVRLPEALRNGNSALVKLAGKVDSFSLVLQRTPECQLKRQIEKEYHAMVFTTRKEVRKYCPKYRYFPGEGILDFSTDCASGQLEPGDLGKPPQPKRGRLCQECCFFLGEPEEQFPRTTVSGIPKDLTPQA
Ga0314861_0001070_24765_25223F003859AGGAGMDELTAQKGTLSDSAGITVYLLPVANLCKSLKLGWQWRRLRWAVAAASEAAQGHEANGVRPGAQEFKTLYNEVARKLEGYSHESGHPIDTLKAKLPALCAIERLANPDPAAPQNRLGLTLGIIIAAVLGSIGIGALIGLGAGMAHWIAHLFA
Ga0314861_0001070_25235_25567F016632AGGAGGLTGILETFALVEISSAIGFLATWRNKVLKAKVNFFRQPRNKPSSFDKVLRGKAGRAVTRQDRLRLQLADGLVQLIRKLVQYEAFRQVIRGLALAHSPMRRALRKKGGRSW
Ga0314861_0001070_25564_25764F027079AGGAGGVIKSFLNLCLILFLDTLAYMVAFVAAAVVTWAAICGARRGFAVFKNTVVALWERRRKKEMHAHATR
Ga0314861_0001070_25766_26050F025427N/AMEKLLVSLETCPIQKKGLFWRLFKLYWKKLLFIALMLVLPGGLIVLFLCVTVWALNWEREMTAYLDATFRKWKKDNDVQCDFDGWLDEKGNDRV
Ga0314861_0001070_26047_26376F002761AGGAMTFTPSSTSSFTAGAVFWSMVWAGLGKLNELAKFVGFKRAKPKEAALRWINSHKVITLTATEVVNYSVHGISSPLAVTFALGGTAVNVLMVAVVVPIWYRLSRLESRLS
Ga0314861_0001070_26440_26628F039911AGGAGMKYTIAAVLAVVAAVAGYFGIRRLTHKDLGFTPVKRYATKLAKTLLHTEATAAQEAGAAPTA
Ga0314861_0001070_26811_27200F005112AGGAGMSLAVKYKLFWAACIATLCGLAFWKNSKSYPGKSRLWRLGKSVIDTGLVLLLVVYAPALLLMYVVIWLTSPFKNKIMQSTAAFASILAVSHLAGIIFEAVAVLGVFAVDLFTGQVVARMDKRNKLPKAA
Ga0314861_0001070_8523_10229F057933N/AMMLETHLRQAATVLLESAIRIAPPDTREWGQAMRGELSYVEGCWAALLWALGGASVMAKHALVSLLIPGRRQGLGPGDELFAKNVSLGKAALVAGAGCILAALLFFAAPPFRQAFRVALKPWYFMFQLASRNYQPGFDALAKRAEMQHDPEGLAFCAVRLQNARQSARLAEEAVRLNPSLLWVYAVVGMRHPELPQIGQWMVELERWDPQNALFHLIEEESIERAHYRGRIWTPPTREQEQAWQSAIAAAFQSPKFDDYLDRVAELTRRVVPRYGFYDPYEVESREQLDLPVDALENSERFAKSLLRSGEDLEARGDRKSARDKYWTVARFGQVIDSQGRTGFEHLTGTSLQAMAYKQLQASSEKGGNQEEAALFGYLAAKFDPLSGEHPGFPGESAFGLDTARRNAAVVQISGLMILVFSGLAVVAAAILIVGGSVSRRTRPAAQRARPVATMIVLTSAAGLLFSSITLYLTYRPYWYIFQGAILNGGRSQARDLLFFLNDTEVPPGVSPRVYLLLHSLLYSGSPSFLFYVWTGVTLLGLIGLVLILLRHFLGRPRANRLQHHPRLP
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