Scaffold Ga0314861_0001011

Overview

Basic Information

• Taxon OID: 3300033977
• Scaffold ID: Ga0314861_0001011
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39568
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Peru: Loreto
• Coordinates
  • Lat. (^o): -4.0712
  • Long. (^o): -73.2029
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024736	Metagenome / Metatranscriptome	204	Y
F046781	Metagenome / Metatranscriptome	150	Y
F088421	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0001011_37297_37653	F046781	AGG	MEAGELYFTDNQEVGNTSRGKILIIDDNAKALEARSERLRREGLEVRAFASLPEGLSCFESEHFDLIVVKLKEVHDLENEDFWSVSSRSTAGGPVSFWHAATFGLVTWMWRTWELWTN
Ga0314861_0001011_4983_5333	F088421	AGGGGG	MKKVIVILLFAAFAVVGLAATNVVANGQEKPAAAAKQLRWDGHIVRIDNDASYMDVRNSAGQTKRIHWDSSTLWTKLNKKVADHSEFKEEERVICLGTAGEKGAFNATRIDLRVHP
Ga0314861_0001011_5493_5837	F024736	AGGAGG	MRRVIVILLFPAFALVGLAAHVAVANGQEKPAAAAKQGRWHGVIVRINKDASTLDVRKGTIEKRIHFDSSTKWTRGTKTVDMSEFKEGADVICLGTYESGSAVMNATRIDLRRE