Scaffold Ga0314861

Basic Information
Taxon OID	3300033977 Open in IMG/M
Scaffold ID	Ga0314861_0000897 Open in IMG/M
Source Dataset Name	Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033977 Open in IMG/M

Scaffold ID

Ga0314861_0000897 Open in IMG/M

Source Dataset Name

Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	42774
Total Scaffold Genes	39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	25 (64.10%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

42774

Total Scaffold Genes

39 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

25 (64.10%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location Name	Peru: Loreto
Coordinates	Lat. (^o)	-4.0712	Long. (^o)	-73.2029	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Peru: Loreto

Coordinates

Lat. (^o)

-4.0712

Long. (^o)

-73.2029

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007097	Metagenome / Metatranscriptome	357	Y
F008672	Metagenome	329	Y
F010661	Metagenome	300	Y
F011724	Metagenome	287	Y
F016487	Metagenome	246	Y
F021037	Metagenome / Metatranscriptome	220	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0000897_14300_14776	F011724	GAG	MGYCTVDDVCTAFPRFVRNAAGSIQDVQIQDWIDDRKARIRLALFARNIDPDAMTLTPDQAGFLRALNRDGGIADLGDALQANVSLQPSEYSLPREHRASFERQIAEIKQGLYDKFFSPLAKTIEIEPTLGGTAGGETDRSTAFDRGEDKSFSKNQTF
Ga0314861_0000897_14892_15446	F008672	GGA	MWTSYYNAGLSKQVVRQLLAVINRDIQAALDFVSGVPGSYAPFAEYDLALLPVQQFPAILLTPDTVTFDEGANFTLRQTLRLSCVIALAHQDRNALAEITQDYVRAVRAVLDTLWESSPGDFLLTSLPLPSPPFPNGALSPGLASGKLMNIFADRHTFEEIRRGAQSGFVMAASISVIVEIEET
Ga0314861_0000897_16425_16946	F010661	N/A	VTDSNSIATAADFRKLAEDGAFEEPRRVVLPKSGFAVVLRRPTKFYWALRRSAWPRELREKLDLVGLGVRPELTAEETLLLFREDRQMLNEAFVDPKPSLDPGFTQFDPNWLPKEDAEFILKYLRGQVLANGQDLETFPGGEPGHPERSGTNGALIRENPERDVIPRGSSLAR
Ga0314861_0000897_18471_18653	F016487	N/A	MIQGNQAWTQALAQLQKQVYYVVEIPDFAIAIASFPATAQAVATLSGYGVTLYGVGGYGT
Ga0314861_0000897_23112_23597	F007097	N/A	MSQLTLSAIPGFFDLADSAIAAGQPLTDDSMLKISHNAKFGAVRSKLIFMGFYANGNTVPTPIDPDDGYAYSRAECQFIWMIYSNRAPAPGFVPGQAAPPAQANSQPGQLYNFPGSWDINDATGVITLRTTYWQSGTEVVTNDGIIKVYAVCLRLSLNSAN
Ga0314861_0000897_29949_30332	F021037	N/A	VNEVKTMFRLRVPSFYVALVMFLASCAWSSSAMARVAKILRAGQAMNFTVEGKINTLDHNKLTLNTEENIIFHVRYDDKTEFKRDDGSPASSKDLRVGLRIRVEGDLTESGEIVAQRIVLQKAPPKK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0314861_0000897

Overview

Ecosystem & Geography

Associated Families

Sequences