Scaffold Ga0314861_0000882

Overview

Basic Information

• Taxon OID: 3300033977
• Scaffold ID: Ga0314861_0000882
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 43241
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (81.82%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Peru: Loreto
• Coordinates
  • Lat. (^o): -4.0712
  • Long. (^o): -73.2029
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016631	Metagenome	245	Y
F019075	Metagenome	231	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0000882_32008_32244	F019075	AGGAGG	LSYFQPERALIAREIREERRRELDAMLSQLPQRRADRLPAPSTLSLEAHFQRTIVNTREDVQRAKDVQSTHILRWLRS
Ga0314861_0000882_37232_38356	F016631	GAGG	MNRLSNLALSVGETLVHEAGRLLFGIALGRAKELLCTPQPLGTRQLALNRALQKKAVDGALLAGPRTGKEYAKFTLKKGLPTEQRPRALAVENAPHSVDDFNGAILEGYGKGERRLLYTATGVIKLGNSSRLGKINVHAHKADKAGFHYDFVAEGVDPHTESFEVNIPNGALKGRYAFRQAFEKGQYLVHRMKDNSALVEKPDIHLKPEEFLKTVTQSGRPVSVGWKDDGSLANVAIHNLRVVYRSHRPEGESYYDKLPAIEGVSNHSPVWLARKLFPGPEQEGTVLRGEPHHPDGAARVGGILNALPEKSIRIQQERGPVEFYAWDIPKLKGRDVSQMPYGQRRELYEAVIEESVCSIAISMLSPQCPRAATP