Scaffold Ga0314861_0000829

Overview

Basic Information

• Taxon OID: 3300033977
• Scaffold ID: Ga0314861_0000829
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 44631
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (73.17%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Peru: Loreto
• Coordinates
  • Lat. (^o): -4.0712
  • Long. (^o): -73.2029
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001364	Metagenome / Metatranscriptome	713	Y
F008739	Metagenome / Metatranscriptome	328	Y
F074294	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0000829_13343_13738	F008739	AGGAG	MKMRQMVPIVLCLTIVFAAAFAEGEGKRPKPGPLTGTWECTAHGGAQGDMPFTLYLEQTKGTLTGSVSSPIGGTEISAGTVKKNEIEIHIDSPQGSYQLTGRLKKGELSGKWSSDTENGTWEGKKQASGGK
Ga0314861_0000829_14974_15117	F001364	AGGAGG	MLGSLLFIACVVLQFHYHDSIPWYIWVAAVIALCVSFGEPAMRFKKE
Ga0314861_0000829_17424_18164	F074294	GGA	LTARELAARRANLEKARAAPRDAYRPTEKRLQASRANLAKAIAARRRPEGNASARLNALKHGLFAKQTLAESVDRLAEDKEEFAQHLYQFERVFVPGDEEEKRIVRRLAETVWRRMRLFSAQACREKEKLQRMFAEAPAAAQLSLDDTVARAEGLALALMQFEAFFRELNRLESQVEFWLRRLIRKRSQGKLRWKGFRPRRDPLMEPPEAERQVDRFVQHWDALSADGQAALRDEARSMVDARSRT