Scaffold Ga0314861_0000766

Overview

Basic Information

• Taxon OID: 3300033977
• Scaffold ID: Ga0314861_0000766
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 46821
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (51.72%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Peru: Loreto
• Coordinates
  • Lat. (^o): -4.0712
  • Long. (^o): -73.2029
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002761	Metagenome / Metatranscriptome	531	Y
F005112	Metagenome / Metatranscriptome	411	Y
F019075	Metagenome	231	Y
F039911	Metagenome / Metatranscriptome	162	Y
F098482	Metagenome	103	Y
F104296	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0000766_13767_14162	F005112	AGGAG	MSLAVRYKLFWAACIASLCVLAFWKNSKSYPRKSKFWRLGKSTIDTGLVLLLVLYAPALLLIYVVTWLTSPFKNKIMQATAAFASILAVSHLAGIVFEAVAVFGVFAVDLLTGQVVARMDKRDRNRLPKAA
Ga0314861_0000766_14341_14526	F039911	AGGAG	MKYTIAVLAVVAAVAGYFGIRHLTHKDLGFTPVKRYASKLAKTLLHTETTAAQEAGVASA
Ga0314861_0000766_14590_14919	F002761	AGGAGG	MTFTPSSTSSFTAGAVFWSMVWAGLGKLNELARFVGLKRCKPRESALRWINSHKVIALTTTEVVNYSVHGISSPLGVTFAVGGTLINVLMVTFVVPIWCRLSKLESRLS
Ga0314861_0000766_16589_18766	F098482	GGAG	VFELMRDDEGVKEEIGFYKPDGWVDQEGNLVMNENRWKLWRMYAAGLPAMQFRHCRDAFYRTQMESPQNSDPDRFRIRFREPKDLMTAKPPELAGAGVRKYIFPEPFVFDRQGYPHWERSTLPEVNSVYLGGFEGEFISLRNPNASHKESGKLRGRRLQQFAEIDRGTVMFVHLGFAASPDGTPGLGKSFNGADFDDSVLALLDPEIVAHWKTLQDYPQVSTTPTQVMEIDDGDALFDRHPEVERYNQLFVVKMIFDAKNGQMGIGCVVNAIVWFNLLWLNRESIIAQLRAMEPSTKVLDAIRWMQHELPRSQMPMIASRLEEIIDSIKMNGKSVEWANAAITEFRNTCPVAPKFWWQGGFQGQGRIPRRRLGNGNEPIPVTTAMDVAREEWVAIFKKARKFADKESWKRCWRVPLEIRTFPTRPEAATAARDFWLLYNCTREAKKAEFLKAGKDHRGKSVANEQDASLAAYLFAEEDVHNRIKASGMYLEIYAELVKLVFDRELTLEPPRNPDGSVKPVADGILGGPHTLDGFLDMAKAAGATSRYVPITWESNRTRAEYGHLNLDVVVEDTLVRMVGSTPNPASWLGIVDVPNGQYRLEHGLLAMEDDGATLPQPATVALPAVNGFEQRLKDITLKQQDRQRIEAELKLFQSQIGQRVTVKPVTYHNPRTRQDEPAAQVFVEGKSEPLCWVSREHVPAVTRQLTGILVSNGKYSLTAVCMLPH
Ga0314861_0000766_18754_19143	F104296	AGGAGG	MPNHEELYFTPDIEKPRQKWSVLEDPEHPGCRLIHRHYRPPGEKPDVRASFGFSELSPVLEHYAAKAGIEYSRISLGRGTNSFGVALSLVEDGLGLAIPGDGVWYPVIPWVRDDGFCAVLMREPVPCSS
Ga0314861_0000766_19326_19562	F019075	AGGAGG	MRYFQPERALIAREIREERRRELNAMLSQLPQRRADPLPAPPPPSLEAQFQMSVGKMREDVQRAKDVQSTHILRWLRS