Scaffold Ga0314861_0000665

Overview

Basic Information

• Taxon OID: 3300033977
• Scaffold ID: Ga0314861_0000665
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 51379
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (70.83%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Peru: Loreto
• Coordinates
  • Lat. (^o): -4.0712
  • Long. (^o): -73.2029
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007097	Metagenome / Metatranscriptome	357	Y
F008672	Metagenome	329	Y
F010661	Metagenome	300	Y
F011724	Metagenome	287	Y
F021037	Metagenome / Metatranscriptome	220	Y
F042698	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0000665_13289_13582	F042698	GGAGG	MAISVTSSASDILVDNRGIMPDLVTLTITGMTASASNLVPHGLPRTPKRVWFTGVGSGVNAAACSLDTSTVAAGFDGTNIYIYTPASVTAVLAHVEY
Ga0314861_0000665_13678_14154	F011724	GAG	MGYCTVDDVCTAFPRFVRNAAGSIQDVQIQDWIDDRKARIRLALFARNIDPDAMTLTPDQAGFLRALNRDGGIADLGDALQANVSLQPSEYSLPREHRASFERQIAEIKQGLYDKFFSPLAKTVEIEPTLGGTAGGETDRSTAFDRGEDKSFSKNQTF
Ga0314861_0000665_14263_14817	F008672	GGA	MWTSYYNAALSKQVVRQLLAVINRDIQAALDFVSGVPGSYAPFAEYDLALLPVQQFPAILLTPDTVTFDEGANFTLRQTMRLSCVIALTHQDRNTLAEITQDYVRAVRAVLDTLWESSPGDFLLTNLPLPSPPFPNGTLSPGLASGKLMNIFADRHSFEEIRRGAQSGFVMAASLSVIVEIEET
Ga0314861_0000665_15775_16296	F010661	GAGG	MEKGNGIATAADFRKLAEDGAFEEPRRVVLPKSGFAVVLRRPTKFYWALRRSAWPRELREKLDLVGLGVRPELTAEETLLLFREDRQMLNEAFVDPKPSLDPGSTQFDPNWLPKEDAEFILKYLRGQVLANGQDLETFPGGEPGHPESSGANGAFVRENPERDVIPRGSSLAR
Ga0314861_0000665_22560_23045	F007097	AGGA	MSQLILSSIPGFFDLADSALAAGQPLTDDSMLKISHNAKFGGVRSKLIFMGFYANGNTVPTPIDPDDGYAYSRAECQFIWMIYSNRAPAPGFVPGQAAPPAQANSQPGQLYNFPGSWDINDATGVITLRTTYWQSGTEVVTNDGIIKVYAVCLRLSLNSAN
Ga0314861_0000665_28696_29061	F021037	GAGG	MFRLRAASLYVPVILFLASCAWNSCSEARVAKILRASQAMNFTVEGKINSLDQNKLTLNTEENIIFHVRYDEKTAFKRDDGSPGSSKDLRVGLRIRVEGDLTESGEIVAQKIELQKAPPK