Scaffold Ga0314861_0000650

Overview

Basic Information

• Taxon OID: 3300033977
• Scaffold ID: Ga0314861_0000650
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 52104
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (61.70%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Peru: Loreto
• Coordinates
  • Lat. (^o): -4.0712
  • Long. (^o): -73.2029
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007097	Metagenome / Metatranscriptome	357	Y
F008672	Metagenome	329	Y
F010661	Metagenome	300	Y
F011724	Metagenome	287	Y
F016487	Metagenome	246	Y
F021037	Metagenome / Metatranscriptome	220	Y
F042698	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0000650_14457_14750	F042698	GGAGG	MAISVSSASPDILVDNRGIMPDLVTLTITGMTANASNTVPHGLPRTPKRVWFTAVGSGVIAPSCSLDTSTVAAGYDGTNLYIFTPTGVTSVLAHVEY
Ga0314861_0000650_14835_15311	F011724	AGGA	MGYCTVDDVCTAFPRFVRNAPNSVQDTQIQDWIDDHKARIRAALYARALDPDAMQLTADQANFLRALNRDGAIADLGDALQGNVSLQPAEFSQAAERRASFERQIAEIKQGLYDKFFSPLAKTVEIEPTLGGTAGGETDRSTAWDRGEDKSFSKNQVF
Ga0314861_0000650_15413_15967	F008672	N/A	MWTSYYNAGLSKQVVRQLLAVIKRDIQAALDFVSGAPGSYTPFAEYDLALLPVEQFPALLLTPDSVSFEEEANGTLHQSMRLTCAIALTHQDRNTLAEITQDYVRAVRAVLDTLWESSPGDFLLTTLPLPSPPFPAGALSPGLANGKLMKIFANSHTFEEIRRAARSGFVMAATMSIVVEIEES
Ga0314861_0000650_17088_17609	F010661	GAGG	MGKGNEIATAADFRQLAEAAAWTDPEQVKLPKCGLSVIVRRPTKFYWALRRSAWPRELREKLDLLGIGVRAELTIEEKLLLIREDRQMLNEAFVDPKPSLNPGSTQFDPDWLPKEDVEFILRYLRGQVLANGQDLETFSGGEPRHLEGSGGDGALVRENPQRVVMPRGGSVAD
Ga0314861_0000650_19250_19432	F016487	N/A	MIQGNQTWTQALAQPQKQAYYIVEIPDFAIAIASFPPSSQVATTLAGYGVTLYGVGGYGT
Ga0314861_0000650_23928_24413	F007097	AGGA	MSQLTLSSIPGFFDLADSALAAGQPLTDDSLLKISHNAKFGTVRSKVIFMGFYANGNTVPTPIDPDDGYAYSRAECQFVWMIYSNRSPAPGFVPGQASPPAQSSSQPGPLYNFPGGWDINDATGLVSLRTTYWQNGNEIVNNDGIIKVYAACLRLSLNSSN
Ga0314861_0000650_28549_28932	F021037	N/A	VDEDNAMNPLRSTCLYVPVVIFLAGCVWSSCSEARGAKALSAGQEMNFTVEGKINTLGQNKLTLNSGENIIFHVSYSDKTEFKSDDGSPASSKDLRVGLRIRVEGDLTESGEIVAKKIELQKTPPKK