NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314861_0000650

Scaffold Ga0314861_0000650


Overview

Basic Information
Taxon OID3300033977 Open in IMG/M
Scaffold IDGa0314861_0000650 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)52104
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (61.70%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NamePeru: Loreto
CoordinatesLat. (o)-4.0712Long. (o)-73.2029Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007097Metagenome / Metatranscriptome357Y
F008672Metagenome329Y
F010661Metagenome300Y
F011724Metagenome287Y
F016487Metagenome246Y
F021037Metagenome / Metatranscriptome220Y
F042698Metagenome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0314861_0000650_14457_14750F042698GGAGGMAISVSSASPDILVDNRGIMPDLVTLTITGMTANASNTVPHGLPRTPKRVWFTAVGSGVIAPSCSLDTSTVAAGYDGTNLYIFTPTGVTSVLAHVEY
Ga0314861_0000650_14835_15311F011724AGGAMGYCTVDDVCTAFPRFVRNAPNSVQDTQIQDWIDDHKARIRAALYARALDPDAMQLTADQANFLRALNRDGAIADLGDALQGNVSLQPAEFSQAAERRASFERQIAEIKQGLYDKFFSPLAKTVEIEPTLGGTAGGETDRSTAWDRGEDKSFSKNQVF
Ga0314861_0000650_15413_15967F008672N/AMWTSYYNAGLSKQVVRQLLAVIKRDIQAALDFVSGAPGSYTPFAEYDLALLPVEQFPALLLTPDSVSFEEEANGTLHQSMRLTCAIALTHQDRNTLAEITQDYVRAVRAVLDTLWESSPGDFLLTTLPLPSPPFPAGALSPGLANGKLMKIFANSHTFEEIRRAARSGFVMAATMSIVVEIEES
Ga0314861_0000650_17088_17609F010661GAGGMGKGNEIATAADFRQLAEAAAWTDPEQVKLPKCGLSVIVRRPTKFYWALRRSAWPRELREKLDLLGIGVRAELTIEEKLLLIREDRQMLNEAFVDPKPSLNPGSTQFDPDWLPKEDVEFILRYLRGQVLANGQDLETFSGGEPRHLEGSGGDGALVRENPQRVVMPRGGSVAD
Ga0314861_0000650_19250_19432F016487N/AMIQGNQTWTQALAQPQKQAYYIVEIPDFAIAIASFPPSSQVATTLAGYGVTLYGVGGYGT
Ga0314861_0000650_23928_24413F007097AGGAMSQLTLSSIPGFFDLADSALAAGQPLTDDSLLKISHNAKFGTVRSKVIFMGFYANGNTVPTPIDPDDGYAYSRAECQFVWMIYSNRSPAPGFVPGQASPPAQSSSQPGPLYNFPGGWDINDATGLVSLRTTYWQNGNEIVNNDGIIKVYAACLRLSLNSSN
Ga0314861_0000650_28549_28932F021037N/AVDEDNAMNPLRSTCLYVPVVIFLAGCVWSSCSEARGAKALSAGQEMNFTVEGKINTLGQNKLTLNSGENIIFHVSYSDKTEFKSDDGSPASSKDLRVGLRIRVEGDLTESGEIVAKKIELQKTPPKK

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