Basic Information | |
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Taxon OID | 3300033977 Open in IMG/M |
Scaffold ID | Ga0314861_0000650 Open in IMG/M |
Source Dataset Name | Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 52104 |
Total Scaffold Genes | 47 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 29 (61.70%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | Peru: Loreto | |||||||
Coordinates | Lat. (o) | -4.0712 | Long. (o) | -73.2029 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F007097 | Metagenome / Metatranscriptome | 357 | Y |
F008672 | Metagenome | 329 | Y |
F010661 | Metagenome | 300 | Y |
F011724 | Metagenome | 287 | Y |
F016487 | Metagenome | 246 | Y |
F021037 | Metagenome / Metatranscriptome | 220 | Y |
F042698 | Metagenome | 157 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0314861_0000650_14457_14750 | F042698 | GGAGG | MAISVSSASPDILVDNRGIMPDLVTLTITGMTANASNTVPHGLPRTPKRVWFTAVGSGVIAPSCSLDTSTVAAGYDGTNLYIFTPTGVTSVLAHVEY |
Ga0314861_0000650_14835_15311 | F011724 | AGGA | MGYCTVDDVCTAFPRFVRNAPNSVQDTQIQDWIDDHKARIRAALYARALDPDAMQLTADQANFLRALNRDGAIADLGDALQGNVSLQPAEFSQAAERRASFERQIAEIKQGLYDKFFSPLAKTVEIEPTLGGTAGGETDRSTAWDRGEDKSFSKNQVF |
Ga0314861_0000650_15413_15967 | F008672 | N/A | MWTSYYNAGLSKQVVRQLLAVIKRDIQAALDFVSGAPGSYTPFAEYDLALLPVEQFPALLLTPDSVSFEEEANGTLHQSMRLTCAIALTHQDRNTLAEITQDYVRAVRAVLDTLWESSPGDFLLTTLPLPSPPFPAGALSPGLANGKLMKIFANSHTFEEIRRAARSGFVMAATMSIVVEIEES |
Ga0314861_0000650_17088_17609 | F010661 | GAGG | MGKGNEIATAADFRQLAEAAAWTDPEQVKLPKCGLSVIVRRPTKFYWALRRSAWPRELREKLDLLGIGVRAELTIEEKLLLIREDRQMLNEAFVDPKPSLNPGSTQFDPDWLPKEDVEFILRYLRGQVLANGQDLETFSGGEPRHLEGSGGDGALVRENPQRVVMPRGGSVAD |
Ga0314861_0000650_19250_19432 | F016487 | N/A | MIQGNQTWTQALAQPQKQAYYIVEIPDFAIAIASFPPSSQVATTLAGYGVTLYGVGGYGT |
Ga0314861_0000650_23928_24413 | F007097 | AGGA | MSQLTLSSIPGFFDLADSALAAGQPLTDDSLLKISHNAKFGTVRSKVIFMGFYANGNTVPTPIDPDDGYAYSRAECQFVWMIYSNRSPAPGFVPGQASPPAQSSSQPGPLYNFPGGWDINDATGLVSLRTTYWQNGNEIVNNDGIIKVYAACLRLSLNSSN |
Ga0314861_0000650_28549_28932 | F021037 | N/A | VDEDNAMNPLRSTCLYVPVVIFLAGCVWSSCSEARGAKALSAGQEMNFTVEGKINTLGQNKLTLNSGENIIFHVSYSDKTEFKSDDGSPASSKDLRVGLRIRVEGDLTESGEIVAKKIELQKTPPKK |
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