Scaffold Ga0314861_0000591

Overview

Basic Information

• Taxon OID: 3300033977
• Scaffold ID: Ga0314861_0000591
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 55685
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (70.37%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Peru: Loreto
• Coordinates
  • Lat. (^o): -4.0712
  • Long. (^o): -73.2029
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000530	Metagenome / Metatranscriptome	1047	Y
F005311	Metagenome / Metatranscriptome	405	Y
F008092	Metagenome / Metatranscriptome	339	Y
F045224	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0000591_20764_20997	F008092	AGGAG	MSTTPSTTIVTNLKSLTAPTANTISDSVAYGLDVSGMQADALTKAYELKACLTLLVAHTDAADPNLATMNNILASLT
Ga0314861_0000591_22095_22556	F045224	GGA	MSDDDFDERRGAGRQGRAVPYTVKDFQVEVLGQLAEVQALTEALQESLATDLKGSQEQSRLLRFDGRTLVAIGAIALSLTGYVLQDARNSSRRDAEIETTKARVSSLERIATANTEGRIRTEVELGQLHEGQSEIKALIQAHDNASRKARAQK
Ga0314861_0000591_27048_27467	F005311	N/A	MEEMMGAGICGAAMLRAANAMLQALGGDTVSLLLPASATASDSAGQLGLVDPGVQTVVISPVVTRALPTGNLGPRRRIEFTLPASAITDALPGLGMGTAEDLFNAVLGLSYNNDLFHIETVVPEDFAGTVCFYLVTAVE
Ga0314861_0000591_7452_7853	F000530	N/A	MDEKPDSTANAAAADENKTVNRPFRVKLRGSVLVLVRLPNRRAVRAAFHQLSTTGGVIHIEKPLEEKLEVELIFHVGQATIRSKAQMLFPMWATQGWMQPFRFSALSDADRQALDSNLKSFVGEMANGTAAGA