Scaffold Ga0314861_0000585

Overview

Basic Information

• Taxon OID: 3300033977
• Scaffold ID: Ga0314861_0000585
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 56148
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (65.52%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Peru: Loreto
• Coordinates
  • Lat. (^o): -4.0712
  • Long. (^o): -73.2029
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022135	Metagenome / Metatranscriptome	215	Y
F025901	Metagenome / Metatranscriptome	199	Y
F026469	Metagenome / Metatranscriptome	197	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0000585_1297_1626	F025901	N/A	MPATAQNKPVKAGTARYGDPTSTARKYQNFLYGVIKTLDTHGMVLEKTKAGIDQTFKFQPKTKFIHDDKPSSREDLKVGNQVYVDVHEDKKTGDLYAKKVISGIVVPVE
Ga0314861_0000585_23917_24156	F026469	GGAG	MATKIVPSLETVEGLIVEVEEWYERVRKIRQKMSGVEPGSDPYQDLLSQLWVELDWLKMKAEVAAEAIDEYQDSLPEDN
Ga0314861_0000585_4174_4881	F022135	AGGTGG	MKKRHIRLAVLLLPLCLPVFALDKKDLSERYKGKYLVVLREGLAVGMCADLPGVPSGNALDVRITGESVEFHPQTGATAAMTGCGEIIPEPLHKREIVLARFAWFRRLRGGSFTITVQNLAPHQLKRAGGASRHEHLKYGRADLIFETSDAKDYDAVASLVEKWLKPFDTRAEAAQFGNTASGVYVREVKLGMSFAEVEAALGPPQTRVELGEKVLYKYKDMTVEFHDGKVSDVK