Scaffold Ga0314861

Basic Information
Taxon OID	3300033977 Open in IMG/M
Scaffold ID	Ga0314861_0000518 Open in IMG/M
Source Dataset Name	Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033977 Open in IMG/M

Scaffold ID

Ga0314861_0000518 Open in IMG/M

Source Dataset Name

Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	60780
Total Scaffold Genes	67 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	54 (80.60%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

60780

Total Scaffold Genes

67 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

54 (80.60%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location Name	Peru: Loreto
Coordinates	Lat. (^o)	-4.0712	Long. (^o)	-73.2029	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Peru: Loreto

Coordinates

Lat. (^o)

-4.0712

Long. (^o)

-73.2029

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F017431	Metagenome	240	Y
F019267	Metagenome / Metatranscriptome	230	Y
F022798	Metagenome	212	Y
F023263	Metagenome	210	Y
F040975	Metagenome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0000518_25875_26180	F017431	GAGG	MPKTKSKVEHELDRTEILRYLNECGLQPVTPRSILVYLDDCLRPVSEEGMQFQLRYLRDRKWVELGIEKRVGQPETIRWVRITADGVDEYDRRAAALGEAK
Ga0314861_0000518_34743_35246	F023263	AGGAGG	MLGNQGLTAAKFDTNIRALRGTVMGLSVTNLSTESDFYVGLPSGFNAVPTGVLSQDVVEPGYPLTSEMWLDPTTGNPINGSTPPAPFLSQGRAWGLTIFAPEAEVIAADTTIQAEDDVVIADSYGRVTSIRNVTTGNTANVVGKAKYPPTAVNQRIRIQVTLRQEKV
Ga0314861_0000518_36877_37167	F019267	GGAGG	MAASGTPTTLYSFREERRRLYRHIRVDITGLQTGANTIAHGITERENPALGAVPIDEQVLLTSSVAVHRTQAADATNLYYTVDSGSGTTISVFVTV
Ga0314861_0000518_37271_37804	F022798	AGG	MSYTTVDNVAAMFPTFTRNGPKGPADTLIQTFIDDVAGEIDAVLQRRFQEAYASVGFTAWQGSFGPDPLNILEKINRYGACAQLAGVFETAGIAAAARVAKGFHDTFQEAYNKLNARDQDGKPLAQGGDYDYLFDPLAKVETPRPQLGGVAGGDQQPSETGSEDSSNVFKKWDRRES
Ga0314861_0000518_41646_41828	F040975	AGCAG	MILGNQTWQQGLNSLQKQALYVFEIPQFGIVLASFTPAQIQSLAQSGWGVTQWGVSGWGT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0314861_0000518

Overview

Ecosystem & Geography

Associated Families

Sequences