Scaffold Ga0314861_0000503

Overview

Basic Information

• Taxon OID: 3300033977
• Scaffold ID: Ga0314861_0000503
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 61856
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (69.81%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Peru: Loreto
• Coordinates
  • Lat. (^o): -4.0712
  • Long. (^o): -73.2029
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006046	Metagenome / Metatranscriptome	382	Y
F013055	Metagenome / Metatranscriptome	274	Y
F039917	Metagenome / Metatranscriptome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0000503_12604_13146	F006046	GAGG	MKRALISLFVFSMAIFPATLLPQQKLTATNLPDFLARYDTNFGPLQAVFNDLKNEQLPLTDETGQPLARRPLADRLLAATNLRQTARQFAAKPEDLVLAATVVIRTEILADDLFDLAQVAYDNDREDLANRLSALQTTMEENKELLADYLLALAAEKQNRLQQLEKEVDELHQKLKEATK
Ga0314861_0000503_19670_19903	F013055	AGG	MKMVWRVAILVLCALTGLVVTGHGIVEAVLIRAPGHQDIMRHLVEGSISIAGGACVLAVAIDQLECLRTHRKGGDLL
Ga0314861_0000503_219_497	F039917	N/A	MKSHGGKMKKTLTIWITLLTLLCALAIPVLRTTLAKPAPAEHPDYRDAVNDLRSARKHLEKALDDGYGHRDRAMRAIDHAIQECDAAVQALH