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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033977 Open in IMG/M |
| Scaffold ID | Ga0314861_0000439 Open in IMG/M |
| Source Dataset Name | Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 67451 |
| Total Scaffold Genes | 56 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 43 (76.79%) |
| Novel Protein Genes | 9 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (77.78%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Peru: Loreto | |||||||
| Coordinates | Lat. (o) | -4.0712 | Long. (o) | -73.2029 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007097 | Metagenome / Metatranscriptome | 357 | Y |
| F008672 | Metagenome | 329 | Y |
| F010661 | Metagenome | 300 | Y |
| F011724 | Metagenome | 287 | Y |
| F014351 | Metagenome / Metatranscriptome | 263 | Y |
| F021037 | Metagenome / Metatranscriptome | 220 | Y |
| F062368 | Metagenome / Metatranscriptome | 130 | Y |
| F078112 | Metagenome | 116 | Y |
| F083583 | Metagenome | 112 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0314861_0000439_12836_13315 | F083583 | AGGAG | MSDITAIDQSYHLNYNIQIGKFTCLAPDTTVSADGCNVPSGANGTFLGVAQESILPDAMADYSGGVYTLTSGTAWPASSIPASGLGRNIRTRLFGISRVVASGAISRGAYVNIANAQGQIKAVSEAVGTYINVVGIAIDAAVNAGDVIRVLVMPFTYKM |
| Ga0314861_0000439_15269_15556 | F062368 | GGAGG | MPVSVSLTEQFIEVTTAGPYIKNAKLSVTGLTASGNNTVPHGLTDGKGNAVTPITVSLEPTSNNNFYEYQPADSTNIYVGVGSGAGTSCNIYVEY |
| Ga0314861_0000439_15671_16147 | F011724 | AGGAG | MSYCTVDDVCTAFPRFVRNAPNSIQDTQIQDWIDDRKARIRSALYARAIDPDAMALTPDQANFLRALNRDGAIADLGDALEGNVSLQPGEAAQASERRQSFERQIAEIKQGLYDKFFSLLAKTVEIEPTLGGTAGGETDRSTAIDRGENKAFSKDQTF |
| Ga0314861_0000439_16242_16796 | F008672 | N/A | MWVPYYNAGLSKQVVRQLLAIINRDIQAALDFVSGVPGSYAPFVEYDLALLPVQQFPAILLTPDTVTFDEEADFSLHQTIRLSCVVALTHQDRNTLAEITQDYVRAARAVLDTLWESSPGDFLLTSLPLPSPPFPAGALSPGLASGKLTKIFADHHTFEEIHAGAQSGFVMAATMSVIVEIEET |
| Ga0314861_0000439_17776_18297 | F010661 | GAGG | MAISKDIASADDFRKLAEDNAFEEPRRVALPKSGFGVVLRRPTKFYWALRRSAWPRELREKLDLVGVGVRPELTAEETLLLVREDRQMLSEAFVDPKPSLEPGSTQFDPTWLPKEDTEFILKYLRGQVLANGQDLETFPGSEPGRAEGSSGDGALVRENSERDAIPCGSPLAR |
| Ga0314861_0000439_25400_25885 | F007097 | N/A | MSQLTLSTIPGFFDLADSAIAAGQPLTDDSMLKISHNAKFGTVRSKLIFMGFYANSNTVPTPVDPDDGYTYSRAECQFVSMTYSNRAPAPGFVPGQAAPPAQANSQPGQLYNYPGGWDINDATGTVTLRTTYWQNGTEVVTNDGIIKVYAVCLRSSLNSAN |
| Ga0314861_0000439_27005_27361 | F021037 | GAGG | MFRLRTVSLHVPVMITLACLAWSSFSERPVAKSLQADQPMNFTLDGKINSLEHNKLTVHTEENIIFHVSYDDKTEFKSDDGSPASSKDLRIGLKIHVEGDLTESGEIVAHKIVLEKKK |
| Ga0314861_0000439_49714_50064 | F014351 | GAGG | MTDSELQERMDEAIRLIREAIEERGGLLEIEKNPDFRWTGTARLPAGRLTLNGRKTGKHAVPGDTKPVIEASVDLSFEGRLIARLLFYSTKAEVEFPGGAHRPLDHAGLARAFEAL |
| Ga0314861_0000439_9065_9370 | F078112 | GAG | MTVYKNPYEQFSVSLDFSNDVGAGNTIASINAVTAISNLTGLDSTAEVIAAMPAPSISSSGTAVAFEVTAGVAGETHTIFVQVVSSIGEKYQGEITLRVVE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |