Scaffold Ga0314861_0000436

Overview

Basic Information

• Taxon OID: 3300033977
• Scaffold ID: Ga0314861_0000436
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 67957
• Total Scaffold Genes: 65
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (64.62%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Peru: Loreto
• Coordinates
  • Lat. (^o): -4.0712
  • Long. (^o): -73.2029
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003490	Metagenome / Metatranscriptome	483	Y
F007097	Metagenome / Metatranscriptome	357	Y
F008672	Metagenome	329	Y
F010661	Metagenome	300	Y
F011724	Metagenome	287	Y
F016487	Metagenome	246	Y
F042698	Metagenome	157	Y
F057832	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0000436_11212_11766	F008672	N/A	MWTSYYNAGLSKPVVQQLLAIIKRDIQAALDFVSGVPGSYAPFAEYDLALLPLQQFPAILLTPDTVAFDEEANGSLHQTMRLNCAIAVTHQDRNTLAEMTQDYVRAVRAVLDTLWESAPGDFLLTNLPLPSPPFPSGALSPGLASGKLMKIFADSHTFEEIRRGAQSGFVMAASMSVIVEIEEA
Ga0314861_0000436_11941_12417	F011724	N/A	MGYCTVDDVCTAFPRFVRNAAGSIQDAQIQDWIDDRKARIRSALFARNIDPDAMTLTPDQASFLRALNRDGAIADLGDALQGNVSLQPSEYSLPGEHRASFERQIAEIKQGLYDKFFSPLAKTVEIEPTLGGTAGGETDRSTAFDRGEDKAFSKNQTF
Ga0314861_0000436_12496_12789	F042698	GGAGG	MAISVSSASADILVDNRGIMPDLVTLTIAGMTASASNPVPHGLPRTPKRVWFTGLGSGVNAAACSLDTSTVAAGFDGTNIYIYTPASVTSVLAHVEY
Ga0314861_0000436_2982_3467	F007097	GGA	MSQLTLSTIPGFFDLADSAIAAGQPLTDDSMLKISHNAKFGAVRSKLIFMGFYANGNTVPTPIDPDDGYAYSRAECQFIWMIYSNRAPAPGFVPGQAAPPAQANSQSGQLYNFPGDWDINDATGIITLRTTYWQNGTEVVTSDGIIKVYAVCLRLSLNSAN
Ga0314861_0000436_33566_34183	F057832	GGTGG	VNDVLKLEKNERDLVDKLLKEGSTFEDVVEGLNARGGQLITLNAVKTYFQGNRLLQTQRALRQVEDAETLLASLDKDPESAEARLARATFLTGYSRVNRNTSEVTPREAARYRMECENLNLKHQILVMQRQKTKQELDYSRAKTRLIEITQGKMQGDLLRLERELRAHQIGDPLAPDILQRIQQLYGLASQPLQYEETVDALAKA
Ga0314861_0000436_43955_44236	F003490	GGGGG	MVALFAVWGLVTILFLGLVFYRSRLTRREMDWIPLSGDAREEKAIEAQKLIEKKSHKFDLPIRALGALWVVMLLAIVGFWFYHGIMTPPPMPK
Ga0314861_0000436_7983_8165	F016487	N/A	MLQGNQAWTQALAQLQKQAYYTVEIPDFAIAIASFPATAQVVTTLSGYGVTLYGVGGYGT
Ga0314861_0000436_9731_10252	F010661	N/A	MTNSNSVATAADFRKLAEESAFEEPRRVVLPKSGYAVVLRRPTKFYWALRRSAWPGELREKLDLVAVGVRPELTAEETLLLFREDRQMLNEAFVDPKPSLDPGSMQFDPNWLPKEDAEFILKYLRGQVLANGQDLETFPGGEPEHPEGGGANGALVREDPERDVSARGGCLAR