Scaffold Ga0314861_0000419

Overview

Basic Information

• Taxon OID: 3300033977
• Scaffold ID: Ga0314861_0000419
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 70016
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 44 (77.19%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Peru: Loreto
• Coordinates
  • Lat. (^o): -4.0712
  • Long. (^o): -73.2029
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007097	Metagenome / Metatranscriptome	357	Y
F008672	Metagenome	329	Y
F010661	Metagenome	300	Y
F011724	Metagenome	287	Y
F016487	Metagenome	246	Y
F042698	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0000419_14465_14758	F042698	GGAGG	MAISVSSASADILVDNRGVFPDLVTLSIAGMTASASNPVPHGLPRTPKRVWFTGVGSGVNAAACSLDTSTVAAGFDGTNIYIYTPASVTAVLAHVEY
Ga0314861_0000419_14838_15314	F011724	GAGG	MGYCTVDDVCTAFPRFVRNAAGSIQDAQIQDWIDDRKARIRLALFARNIDPDAMTLTPDQAGFLRALNRDGAIADLGDALQANVSLQPSEYSLPKEHRASFERQIAEIKQGLYDKFFSPLAKTVEIEPTLGGTAGGETDRSTAFDRGEDKSFSKNQTF
Ga0314861_0000419_15416_15970	F008672	GGA	MWTSYYNAGLSKQVVRQLLAVINRDIQAALDFVSGVPGSYAPFTEYDLALLPVQQFPAILLTPDTLTFDEGADFTLRQTMRLSCVIALAHQDRNTLAEITQDYVRAVRAVLDTLWESSPGDFLLTSLPLPSPPFPNGALSPGLASGKLMKIFADRHTFEEIRRGAQSGFVMAASMSVIVEIEET
Ga0314861_0000419_16935_17456	F010661	GAGG	MEKGNGIATAADFRKLAEDGAFEEPRRVALPKSGFAVVLRRPTKFYWALRRSAWPRELREKLDLVGLGVRPELTAEETLLLFREDRQMLNEAFVDPKPSLDPGSTQFDPNWLPKEDAEFILKYLRGQVLANGQDLETFPGREPGHPERSGANGALVRENPERDVIPRGSSLAS
Ga0314861_0000419_18985_19167	F016487	N/A	MIQGNQAWTQALAQLQKQVYYAVEIPDFAIAIASFSATAEAVTTLSGYGVTLYGVGGYGT
Ga0314861_0000419_23658_24143	F007097	GGA	MSQLTLSAIPGFFDLADSAIAAGQPLTDDSMLKISHNAKFGAVRSKLIFMGFYANGNTVPTPIDPDDGYAYSRAECQFIWMIYSNRAPAPGFVPGQAAPPAQANSQAGQLYNFPGSWDINDATGVITLRTTYWQSGTEVVTNDGIIKVYAVCLRLSLNSAN