Scaffold Ga0314861_0000317

Overview

Basic Information

• Taxon OID: 3300033977
• Scaffold ID: Ga0314861_0000317
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 82030
• Total Scaffold Genes: 79
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 52 (65.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Peru: Loreto
• Coordinates
  • Lat. (^o): -4.0712
  • Long. (^o): -73.2029
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000348	Metagenome / Metatranscriptome	1250	Y
F022484	Metagenome / Metatranscriptome	214	Y
F059273	Metagenome / Metatranscriptome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0000317_31232_31378	F059273	N/A	VYQLMLAHESGEWEAAAQLSQSLQLDPQGIALYYWQAQKWAREVSAVG
Ga0314861_0000317_47922_48176	F022484	N/A	MAIAKQVRRSVTLPVRLAQQVERIAKKSRLSDNRVLVELIEQGVEARKAREKAFFALAERFRAAADPQEVKRLGDEMGHFIFGE
Ga0314861_0000317_51273_51689	F000348	AGG	LKKALLILAAVVLAPVLVSLALRAAGDWRSIGQTAAGDTVSLSSVRVLRSNQRIALVRVEYKEPTKLPQGGPFVEMRARVRFNCSSAAASPTTEWFYTRDRSGHRVVSKKAAHDDQFGKDSEGGFADLVSQSVCSQRK