Scaffold Ga0314861_0000214

Overview

Basic Information

• Taxon OID: 3300033977
• Scaffold ID: Ga0314861_0000214
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 100204
• Total Scaffold Genes: 88
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 74 (84.09%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Peru: Loreto
• Coordinates
  • Lat. (^o): -4.0712
  • Long. (^o): -73.2029
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006209	Metagenome / Metatranscriptome	378	Y
F022135	Metagenome / Metatranscriptome	215	Y
F025901	Metagenome / Metatranscriptome	199	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0000214_30625_31083	F006209	AGAAGG	MDCEELRDLISELWGGELPAEAREHVSKCAGCEVFLRDARLVQAGFRALAEEAVPQASLGFASRLVRRLQEWKEKGARSEFFETVGRRFVYATLALTLALLLSLALPTSGPVRGVAGADFLGLQSYNQASQPDVIGGDFGDSHELIPGGPTE
Ga0314861_0000214_54018_54398	F025901	AGGAG	MNLRKLGISVTLCLVIALAATAQEKTVKAGTARYGDPSSIARNYQDLLYGVIKTIDAHGMVLEKTKAGIDQTVKFQPKTKFFHDTKPSLREDLKVGDQVYVDVHEDKKTGDLYAKRVISGITVPVE
Ga0314861_0000214_56877_57584	F022135	GGA	MRKRDVAFIVVLLPLCLPVFAIDKKDLAESYKGKYLVVLRGGLAVGMCADLSGVPSGITLDVRISGASVEFSPQAGASAGMTGCGEIIPEPLHKGEIIFAKFAWFRRLKGGFFTITVQTVSPHQVKGGERGSRHERVKYGKADLIFETSDTKDYDAIASLVGTWLRPFDTRAEAAQYGNTASGVYVKEVKLGMSFAEVEAALGPPQTRADLGEKVVYKYKDMTVEFHEGKVTDVR