Scaffold Ga0314861_0000134

Overview

Basic Information

• Taxon OID: 3300033977
• Scaffold ID: Ga0314861_0000134
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 126518
• Total Scaffold Genes: 121
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 87 (71.90%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Associated Families: 12

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Peru: Loreto
• Coordinates
  • Lat. (^o): -4.0712
  • Long. (^o): -73.2029
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003490	Metagenome / Metatranscriptome	483	Y
F007097	Metagenome / Metatranscriptome	357	Y
F008672	Metagenome	329	Y
F010661	Metagenome	300	Y
F011724	Metagenome	287	Y
F016487	Metagenome	246	Y
F021037	Metagenome / Metatranscriptome	220	Y
F041553	Metagenome / Metatranscriptome	159	Y
F057832	Metagenome	135	Y
F062368	Metagenome / Metatranscriptome	130	Y
F078112	Metagenome	116	Y
F083583	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0000134_100807_100989	F016487	GGA	MISGNQTWTQALAQAQKQAYYIVEIPDFAIAIASFPATAPVVTTLGGYGVTLYGVGGYGT
Ga0314861_0000134_105512_105997	F007097	N/A	MSQLTLSAIPGFFDLADSALAAGQPLTDDSILKISHNAKFGTVRSKLIFMGFYANGNTVPTPVDPDDGYAYSRAECQFVWMIYSNRSPAPGFVPGQATPPAQANSQAGQLYNCPGGWDINDVTGVITLRTTYWQNGTEVVTNDGIIKVYAVCLRLSLNSAN
Ga0314861_0000134_109636_110001	F021037	GAGG	MFRFCAASFGVSLAMFLATCAGSSVAVARVGNAWQANQAMNFTVEGKVNSLDHNKLTVHTEENIIFHVSYDDKTEFKSDDDSPASSKDLRVGLMIKVDGDLTESGEIVAQKILLEKSASK
Ga0314861_0000134_60221_60472	F041553	N/A	MQFSDTAAAGAEDLMHVKAFSGKRPVAVPPRQGRKAPRASKKLTIRDLGWTREHAREVRAKLATFAVDWDDPSMDIYNEPQTR
Ga0314861_0000134_71472_71786	F003490	N/A	MPELRRGFRMDTMVVLFAIWGLVTILFLILVFYRSRLTKKETDWIPLSDDSKEEQAIEAQKVIEMRTHKISTPIRALGVIWVVMLVVVVGFWFYHGIMTPPPIK
Ga0314861_0000134_80723_81529	F057832	GGAG	MKKRLSKQNTQGGEHGSGTVSDGISPQSRSKKGFSPCRSRTTPEPTEGSADPQKGETASERKVVSDVKELAPGLKGLVDKMLEEGSTFEDVVEGVNARGRQQITLNAVKTHFQGDRGLQTRRALRQVEDTEALLASLGKDPKSAEARLARATFLTGYSRVNRNASVVTPREAARYRMECENLNLKHQILVMQRKRAQQDLEYSRARTNLLQITQSKMKGEILRLERELQAHRAGDPIGPEVLQRIQQLYGLACHPLFYEESVDAAGKA
Ga0314861_0000134_89916_90221	F078112	AGG	MTVYKCPFEQYAVSLDFTADIGAGNTIASINAVTAISNLTGQDSTVEVIAATPAPAISSSGTAVVFEVSGGVVGETHTISVQVVSSIGEKYQGDVTLRIVE
Ga0314861_0000134_93636_94115	F083583	AGGAG	MSDITAIDQSYHLNYNIQIGKFTCLAPDSTVSTDGCNVPSGANGTFLGIAQESILPDAMADYSGGVYTLTSGTAWPANSIPASGLGRNIRTRLFGISRVVASGAVSRGAYVNIANAQGQIKAVSEAVGTYINVVGIAIDAAVNAGDVIRVLVMPFTYKM
Ga0314861_0000134_95940_96227	F062368	GGAGG	MAISVSLTEQFIEVTTAGPYIKNAKLSVTGLTASGSNTVPHGLTDGKGNAVTPITVSLEPTSNNNFYEYQAADSTNIYVGVGSGAGTSCNIYVEY
Ga0314861_0000134_96335_96811	F011724	AGGAG	MSYCTVDDVCTAFPRFVRNAPNSIQDTQIQDWIDDRKARIRSALYARAIDPDAMALTPDQANFLRALNRDGAIADLGDALEGNVSLQPGEAAQASERRKSFERQIAEIKQGLYDKFFSLLAKTVEIEPTLGGTAGGETDRSTAFDRGENKAFSKDQTF
Ga0314861_0000134_96913_97467	F008672	N/A	MWTSYYNAGLSKQVVRQLIAVINRDIQAALDFVSGAPGSYAPFVEYDLALFPVQQFPAILLTPDTVTFEEEADFTLHQTMRISCVVALTHQDRNALAEITQDYVRAVRAVLDTLWESSPGDFLLTNLLLPSPPFPNGALSPGLASGKLTKLFADRHAFEEIRRSAQSGFVMAATMSITVEIEES
Ga0314861_0000134_98550_99071	F010661	GAGG	MASSNNIATAADFRQLAEGAAWTGPERVQLPKSGLVVMARRPTKFYWALRRSAWPRELREKLDLVGVGVRPELTAEETLLLVREDRQMLNEALVDPKPSLEPGSTQFDPNWLPKEDAEFILKYLRGQVLANGQNLETFSGGEPGHSEGSSGDGALVRQNAERDAIPSGGSLAS