Scaffold Ga0314861_0000068

Overview

Basic Information

• Taxon OID: 3300033977
• Scaffold ID: Ga0314861_0000068
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 166892
• Total Scaffold Genes: 146
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 96 (65.75%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Peru: Loreto
• Coordinates
  • Lat. (^o): -4.0712
  • Long. (^o): -73.2029
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029312	Metagenome / Metatranscriptome	188	Y
F033282	Metagenome / Metatranscriptome	177	Y
F069593	Metagenome / Metatranscriptome	123	Y
F078132	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0000068_15453_15701	F069593	N/A	LEPRETSAQEAALRRQIQGLQDDVRQRIAKLSRAGLAGADRKTLDDARTFFAQSTRALNEADLQRALILARKASLLLSALER
Ga0314861_0000068_155706_156077	F029312	GGAGG	MESGLSTIRNLLYVVLVLVLLSALSGFYVASELARNSDELASLRLLLQKEMMGTALTHAQELEKQMDALNQSAASIDAKLKKAQDDFVARLQVELPRIMDDYVKQRGSLVREKIQQEGVPLPR
Ga0314861_0000068_23300_23878	F033282	GGAGG	MQRWIAWTVTLVAGCLCFYPGLRMLWSGPWGTGQMIQPGTAISVRLLRAITSASAVSGQPFAGYVVSSEAVKGSALVRPGTLVEGTCLAVRRAAGNSRPGYIRLALQGLRDAEGRFVPLETTTFSQWGGPNHGRRRALGTGEKIGDPLPLPVEGEASSNQLPAGVDAFLPTEENIKFVVLKPSPIPTGSCLP
Ga0314861_0000068_42570_42758	F078132	N/A	MLRELAPLLRRIKLPRTRSTKHLRNAAIEVLEAMRAVLDETIEWLRKDNRSEAELKRIRVEG