Basic Information | |
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Taxon OID | 3300033977 Open in IMG/M |
Scaffold ID | Ga0314861_0000068 Open in IMG/M |
Source Dataset Name | Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 166892 |
Total Scaffold Genes | 146 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 96 (65.75%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | Peru: Loreto | |||||||
Coordinates | Lat. (o) | -4.0712 | Long. (o) | -73.2029 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F029312 | Metagenome / Metatranscriptome | 188 | Y |
F033282 | Metagenome / Metatranscriptome | 177 | Y |
F069593 | Metagenome / Metatranscriptome | 123 | Y |
F078132 | Metagenome / Metatranscriptome | 116 | N |
Protein ID | Family | RBS | Sequence |
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Ga0314861_0000068_15453_15701 | F069593 | N/A | LEPRETSAQEAALRRQIQGLQDDVRQRIAKLSRAGLAGADRKTLDDARTFFAQSTRALNEADLQRALILARKASLLLSALER |
Ga0314861_0000068_155706_156077 | F029312 | GGAGG | MESGLSTIRNLLYVVLVLVLLSALSGFYVASELARNSDELASLRLLLQKEMMGTALTHAQELEKQMDALNQSAASIDAKLKKAQDDFVARLQVELPRIMDDYVKQRGSLVREKIQQEGVPLPR |
Ga0314861_0000068_23300_23878 | F033282 | GGAGG | MQRWIAWTVTLVAGCLCFYPGLRMLWSGPWGTGQMIQPGTAISVRLLRAITSASAVSGQPFAGYVVSSEAVKGSALVRPGTLVEGTCLAVRRAAGNSRPGYIRLALQGLRDAEGRFVPLETTTFSQWGGPNHGRRRALGTGEKIGDPLPLPVEGEASSNQLPAGVDAFLPTEENIKFVVLKPSPIPTGSCLP |
Ga0314861_0000068_42570_42758 | F078132 | N/A | MLRELAPLLRRIKLPRTRSTKHLRNAAIEVLEAMRAVLDETIEWLRKDNRSEAELKRIRVEG |
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