Scaffold Ga0314861_0000051

Overview

Basic Information

• Taxon OID: 3300033977
• Scaffold ID: Ga0314861_0000051
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 185289
• Total Scaffold Genes: 137
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 96 (70.07%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Peru: Loreto
• Coordinates
  • Lat. (^o): -4.0712
  • Long. (^o): -73.2029
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000036	Metagenome / Metatranscriptome	4352	Y
F000269	Metagenome / Metatranscriptome	1410	Y
F002979	Metagenome / Metatranscriptome	516	Y
F033872	Metagenome / Metatranscriptome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0000051_118091_118345	F002979	GAG	VKVRHKPEEEERSAESAKVKASLRMFLVPCSCGTTFAVAEDYDHQGAAWSRYLVCPGCGKRHDPKNRLLQMGFHPEGYWKVDRC
Ga0314861_0000051_137732_138136	F000036	AGG	MAYKEIFWMACDSTEQLRAEYGPFHTRAEAETEAKRLGFGYLLRYEHILDERDEIQEVRCIFIELPGAVPAVTEAIQISLHTRCATCGESAVHDHAWQAEVWADIHEFEHSRHRVRLFEHARGQGLKEIGDWRG
Ga0314861_0000051_146478_146693	F033872	AGGAG	MQAWVLQENDFQGEVKLTPQPRYSFYRYSLWRSGTGEHLFDGVAGDLAEALDTVRAHIRHLSARGGKTATE
Ga0314861_0000051_52135_52761	F000269	AGGTGG	MSIFQRALQTICLLPCLLLVASLALASDQPAPKPTDVPAIVIAHLPLPQATGSQMLLQKEESKQYLYVQQASKQGFMVVDVTKPEHPSLLKRTAESNQSTAGNLQMVSPDIAIAEAPEKTPTTLTSSNRPTETVRLLDLSDPRNPKTLETFNKVTSLLPDGRHGLIYLTNDEGLWVLRYNRPPLLEPAKKKPPCDSNAEIMAMPPDCD