Basic Information | |
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Taxon OID | 3300033977 Open in IMG/M |
Scaffold ID | Ga0314861_0000031 Open in IMG/M |
Source Dataset Name | Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 224067 |
Total Scaffold Genes | 199 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 143 (71.86%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | Peru: Loreto | |||||||
Coordinates | Lat. (o) | -4.0712 | Long. (o) | -73.2029 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F003490 | Metagenome / Metatranscriptome | 483 | Y |
F007097 | Metagenome / Metatranscriptome | 357 | Y |
F008672 | Metagenome | 329 | Y |
F010661 | Metagenome | 300 | Y |
F011724 | Metagenome | 287 | Y |
F016487 | Metagenome | 246 | Y |
F021037 | Metagenome / Metatranscriptome | 220 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0314861_0000031_53774_54064 | F003490 | GGGGG | MDTTLALLVVWAVITIVFLALVFYRSRVTRKETDWIPLSDDAKEEQAIEAQKVTEKKGHKLDLPIRVLGWLSVIMLLVVAGYWIYHGIMTPPPISK |
Ga0314861_0000031_83179_83655 | F011724 | GAGG | MSYCTVDDICTAFPRFVRNATGSVQDTQIQGWIDDRKARIRGAFLARLIDPDTMPLTGDQANFLRALNRDGAIADLGDALQSELTLQPSEYSLAGSHRQSFERQIKEIKDGLYDALFSGLARHVEIEPLLGGTAGGETDRSTAFERGENKAFSKNQVF |
Ga0314861_0000031_83761_84318 | F008672 | N/A | MSWQSYYNAGLSKQVVRQLLAVVNRDIQAALDFVSGVPGSYAPFAEYDLALLPVQRFPAILLTPDTVIFDEEANGTLHQTMRLTCVIAVTHQDRNALAEMSQDYVRAVRAVLDTLWESAPGDFLLTNLPLPSPPFSSGALSPGLANGKLMKIFAEGHTFEEIRRRPQSSFAMAATMSIIVEIEEN |
Ga0314861_0000031_85373_85894 | F010661 | GAGG | MGEPNGIATAADFRKLAEGAAWTDAERVQLPKSGLGVMLRRPTKFYWALRRSEWPRELREKLDLVGVGVRPELTPEETLLLVREDQQMLNEAFVDPKPCLHPGLAQFDPQWLPKEDAEFILKYLRGQVLANGQDLEAFRPSEQGHPAGSGRDGALVRENSERDFMPRRSGLAD |
Ga0314861_0000031_87510_87692 | F016487 | GAG | MIQGNQTWQLALAQPQKQAFYLVEIPDFSIAITSFTASAQAATLPHGYGVILYGVGFYGT |
Ga0314861_0000031_92271_92756 | F007097 | AGG | MSQLTLSAIPGFFDLADSAIAAGQPLTDDSMLKISHNAKFGAVRSKLIFMGFYADGNTIPTPIDPDDGYAYSRAECQFVWMIYSNRAPAPGFMPGQASPPALSASQPGQLYNFPGGWDVNDPTGLVSLRTTYWQNGNEVVNSDGIIKVYAVCLRLSLNSGN |
Ga0314861_0000031_96446_96811 | F021037 | AGGAGG | MSHRYALSFYLAIALCLASCAWSSVPEAQVAQGLRASQATNFNVEGKINTLGQNKLTLNSEENMIFHVRWDDKTEFKSEDGSPASSKDLRVGLRIRVEGDLTESGEIVAQKIELLKTPPK |
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