NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0314861_0000031

Scaffold Ga0314861_0000031


Overview

Basic Information
Taxon OID3300033977 Open in IMG/M
Scaffold IDGa0314861_0000031 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)224067
Total Scaffold Genes199 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)143 (71.86%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NamePeru: Loreto
CoordinatesLat. (o)-4.0712Long. (o)-73.2029Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003490Metagenome / Metatranscriptome483Y
F007097Metagenome / Metatranscriptome357Y
F008672Metagenome329Y
F010661Metagenome300Y
F011724Metagenome287Y
F016487Metagenome246Y
F021037Metagenome / Metatranscriptome220Y

Sequences

Protein IDFamilyRBSSequence
Ga0314861_0000031_53774_54064F003490GGGGGMDTTLALLVVWAVITIVFLALVFYRSRVTRKETDWIPLSDDAKEEQAIEAQKVTEKKGHKLDLPIRVLGWLSVIMLLVVAGYWIYHGIMTPPPISK
Ga0314861_0000031_83179_83655F011724GAGGMSYCTVDDICTAFPRFVRNATGSVQDTQIQGWIDDRKARIRGAFLARLIDPDTMPLTGDQANFLRALNRDGAIADLGDALQSELTLQPSEYSLAGSHRQSFERQIKEIKDGLYDALFSGLARHVEIEPLLGGTAGGETDRSTAFERGENKAFSKNQVF
Ga0314861_0000031_83761_84318F008672N/AMSWQSYYNAGLSKQVVRQLLAVVNRDIQAALDFVSGVPGSYAPFAEYDLALLPVQRFPAILLTPDTVIFDEEANGTLHQTMRLTCVIAVTHQDRNALAEMSQDYVRAVRAVLDTLWESAPGDFLLTNLPLPSPPFSSGALSPGLANGKLMKIFAEGHTFEEIRRRPQSSFAMAATMSIIVEIEEN
Ga0314861_0000031_85373_85894F010661GAGGMGEPNGIATAADFRKLAEGAAWTDAERVQLPKSGLGVMLRRPTKFYWALRRSEWPRELREKLDLVGVGVRPELTPEETLLLVREDQQMLNEAFVDPKPCLHPGLAQFDPQWLPKEDAEFILKYLRGQVLANGQDLEAFRPSEQGHPAGSGRDGALVRENSERDFMPRRSGLAD
Ga0314861_0000031_87510_87692F016487GAGMIQGNQTWQLALAQPQKQAFYLVEIPDFSIAITSFTASAQAATLPHGYGVILYGVGFYGT
Ga0314861_0000031_92271_92756F007097AGGMSQLTLSAIPGFFDLADSAIAAGQPLTDDSMLKISHNAKFGAVRSKLIFMGFYADGNTIPTPIDPDDGYAYSRAECQFVWMIYSNRAPAPGFMPGQASPPALSASQPGQLYNFPGGWDVNDPTGLVSLRTTYWQNGNEVVNSDGIIKVYAVCLRLSLNSGN
Ga0314861_0000031_96446_96811F021037AGGAGGMSHRYALSFYLAIALCLASCAWSSVPEAQVAQGLRASQATNFNVEGKINTLGQNKLTLNSEENMIFHVRWDDKTEFKSEDGSPASSKDLRVGLRIRVEGDLTESGEIVAQKIELLKTPPK

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.