Scaffold Ga0314861_0000021

Overview

Basic Information

• Taxon OID: 3300033977
• Scaffold ID: Ga0314861_0000021
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 247052
• Total Scaffold Genes: 234
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 157 (67.09%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Peru: Loreto
• Coordinates
  • Lat. (^o): -4.0712
  • Long. (^o): -73.2029
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003490	Metagenome / Metatranscriptome	483	Y
F007097	Metagenome / Metatranscriptome	357	Y
F008672	Metagenome	329	Y
F010661	Metagenome	300	Y
F011724	Metagenome	287	Y
F016487	Metagenome	246	Y
F021037	Metagenome / Metatranscriptome	220	Y
F033282	Metagenome / Metatranscriptome	177	Y
F042698	Metagenome	157	Y
F100220	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0000021_50379_50879	F033282	GGGGG	MILPGTAISVRLLQPLNSASAQPGQSFAGYVISSEAVKGSSPVRPGTLVEGTCLAVRRAAGDSRPGYIRLALQGLRDAEGRFAPLEATTFSQWGMTALGGRSSGDAARRPHLALGVKTSDRSGSHAEGKASSNSLLASMDALLPTEEDIKFVVLKPSFIPPAFCLP
Ga0314861_0000021_59799_60080	F003490	GGA	MNILIALWALVAIAFLVLLFVRSRLTTKETDWIPLSDDAKETQAIETQKVIEKKSEKYDTPIRILGWLSVIMFLVVVGYWLYHGIMTPPPLAK
Ga0314861_0000021_77047_77346	F100220	AGGA	MTIYKAPFDQFSVSFDFAVEVKAGNSVASIASITATSDLTKLDSTAEVIASSPAPEISATVVTFWVQGGVVGETHTIAVQIISSIGERHQGDITLRIVE
Ga0314861_0000021_81129_81422	F042698	GGAGG	MAISVSSASPDILVDNRGVMPDLVTLTITGMTANATNPVPHGLPRTPKRVWFTALGSGVNAPNCSLDTSSVAAGFDGTNLYIFTPAAVTSVLAHVEY
Ga0314861_0000021_81501_81980	F011724	N/A	MSYCTVDDVCTAFPRFVRNAPNSIQDTQIQDWIDDRKARIRSAFFARNIDPDAMTLSSDQASFLRALNRDGAIADLGDALQGNIALQPGEYSLAGARRKSFELQIKEIKEGLYDKIFAPVIAKTVEIEPTLGGIAGGETDRSTAQDRGENKAFSKDEMF
Ga0314861_0000021_82096_82650	F008672	GGA	MWTPYYNAGLSKQVVRQLLAVINRDIQAALDFVSGVPGSYPPFAEYDLALLPVQHFPAILLTPDTVAFDQEASGTLHQTMRLTCAIALTHQDRNLLAEMAQDYVRAVRAVLDTLWESTPGDFLLTDLALPSPPFPSGALSPGLENGKLMKLFADSHTFEEIRRSPQSGFALEASMSVIVEIEEV
Ga0314861_0000021_84123_84608	F010661	AGG	MTNANNVATAADFRKLAEDGAFEEPRCVALPKSGYGVVLRRPTKFYWALRRSAWPRELREKLDLVAVGVRPELTSEERLLLLREDQQMLQEAFVNPKPSLPPGSTQFDPNWLPKEDVEFILRYLRGQVLANGQDLDTFPGGQSEHSEGSGTDGSLVRQDAE
Ga0314861_0000021_89176_89364	F016487	AGG	MISGNQIWTQALAQPQKQAYYVVEIPDFAIAIASFPALSPVAQTAISGGYGVTLYGIGGYGT
Ga0314861_0000021_94895_95380	F007097	GAG	MSQLTLTSIPGFFDLADAAIAAGQPLTDDSILKISHNAKFGAVRSKLIFMGFYANGNTVPTPIDPDDGYTYSRAECQFAWMIYSNRSPAPGFVPGQAAPPAQSSSQPGQLYNFPGGWDVNDATGLVTLRTTYWQNGNEVVNSDGIIKVYAVCLRLSLNSAN
Ga0314861_0000021_97265_97648	F021037	N/A	VTEDKTMFRLDAAPFCVSLAMFLATCAGSSAAVARVGNTWQAGQAMNFTVEGKINTLGQNKLTLNTEENMLFHVSWGDKTEFKNDDGSAATSRDLRVGLRIKVEGDLTESGEIVAQKIELEKAPPKK